Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9016 | 3' | -56.4 | NC_002512.2 | + | 25008 | 0.66 | 0.958319 |
Target: 5'- cGUCCGagagcucgccgucGGUCGCGGacCUCCacgaggaccgaccgCCGUCGu -3' miRNA: 3'- -CAGGU-------------CCAGCGUCaaGAGGa-------------GGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 137105 | 0.66 | 0.957242 |
Target: 5'- -cCCAGGcgCGCGGggugcgaUCUCUuguaguUCCGUCGc -3' miRNA: 3'- caGGUCCa-GCGUCa------AGAGG------AGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 111745 | 0.66 | 0.956879 |
Target: 5'- -gCCAuGUCGCGGUUCcgcccccgcccccUCC-CCGUCa -3' miRNA: 3'- caGGUcCAGCGUCAAG-------------AGGaGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 154750 | 0.66 | 0.953514 |
Target: 5'- cGUCCgacGGcGUCGCGGUgcccgUCUCC-CCGUg- -3' miRNA: 3'- -CAGG---UC-CAGCGUCA-----AGAGGaGGCAgc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 226192 | 0.66 | 0.949572 |
Target: 5'- -aCCGGGUCGa------CCUCCGUCGg -3' miRNA: 3'- caGGUCCAGCgucaagaGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 94968 | 0.66 | 0.945415 |
Target: 5'- cGUUCAGGUggcUGCGGaUCgCC-CCGUCGa -3' miRNA: 3'- -CAGGUCCA---GCGUCaAGaGGaGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 20573 | 0.66 | 0.944125 |
Target: 5'- cGUCCAGGUcgacccugacgcCGCcGUUCUCCUUgacgcagcgcuccaCGUCc -3' miRNA: 3'- -CAGGUCCA------------GCGuCAAGAGGAG--------------GCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 220919 | 0.66 | 0.941038 |
Target: 5'- cGUCCAG--UGCGGgaugCUCCgcuaCCGUCGg -3' miRNA: 3'- -CAGGUCcaGCGUCaa--GAGGa---GGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 125742 | 0.66 | 0.941038 |
Target: 5'- uGUCCGGGUCGCG--UCcCCcagcCCGUCc -3' miRNA: 3'- -CAGGUCCAGCGUcaAGaGGa---GGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 44895 | 0.66 | 0.941038 |
Target: 5'- -aCCGGGcCGCAGcgCUCa--CGUCGa -3' miRNA: 3'- caGGUCCaGCGUCaaGAGgagGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 107321 | 0.67 | 0.931622 |
Target: 5'- uGUUgGGGg-GCAgGUUCacgUCCUCCGUCGc -3' miRNA: 3'- -CAGgUCCagCGU-CAAG---AGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 108492 | 0.67 | 0.931622 |
Target: 5'- -gCCAGG-CGCGGcUCcgUCCggCCGUCGc -3' miRNA: 3'- caGGUCCaGCGUCaAG--AGGa-GGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 180136 | 0.67 | 0.931622 |
Target: 5'- cGUCCAGcGUCggGCGGUccaggacggCCUCCGUCc -3' miRNA: 3'- -CAGGUC-CAG--CGUCAaga------GGAGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 127016 | 0.67 | 0.929632 |
Target: 5'- gGUCCGGG-CGCGuUUCUCCgacaagagcgugcCCGUCu -3' miRNA: 3'- -CAGGUCCaGCGUcAAGAGGa------------GGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 112275 | 0.67 | 0.92658 |
Target: 5'- cGUCacgauGUCcCGGUUCUCCUUCGUCa -3' miRNA: 3'- -CAGguc--CAGcGUCAAGAGGAGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 1364 | 0.67 | 0.92658 |
Target: 5'- cGUCCucGUCGCcuccGUcUCUCCUCCG-CGu -3' miRNA: 3'- -CAGGucCAGCGu---CA-AGAGGAGGCaGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 111837 | 0.67 | 0.92658 |
Target: 5'- gGUCCGguGGUCGUAGagCgCCgCCGUCGc -3' miRNA: 3'- -CAGGU--CCAGCGUCaaGaGGaGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 209968 | 0.67 | 0.92658 |
Target: 5'- gGUCCucaAGGUCGCcaacggcuucccGGggUUCCUCCG-CGa -3' miRNA: 3'- -CAGG---UCCAGCG------------UCaaGAGGAGGCaGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 184406 | 0.67 | 0.92658 |
Target: 5'- -gCCGGGgggCGCucGgcCUUCUCCGUCGc -3' miRNA: 3'- caGGUCCa--GCGu-CaaGAGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 196311 | 0.67 | 0.921315 |
Target: 5'- -cCCAgcGGcCGCGGUUCUCCuuUCCGggugCGu -3' miRNA: 3'- caGGU--CCaGCGUCAAGAGG--AGGCa---GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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