miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 3' -56.4 NC_002512.2 + 25008 0.66 0.958319
Target:  5'- cGUCCGagagcucgccgucGGUCGCGGacCUCCacgaggaccgaccgCCGUCGu -3'
miRNA:   3'- -CAGGU-------------CCAGCGUCaaGAGGa-------------GGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 137105 0.66 0.957242
Target:  5'- -cCCAGGcgCGCGGggugcgaUCUCUuguaguUCCGUCGc -3'
miRNA:   3'- caGGUCCa-GCGUCa------AGAGG------AGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 111745 0.66 0.956879
Target:  5'- -gCCAuGUCGCGGUUCcgcccccgcccccUCC-CCGUCa -3'
miRNA:   3'- caGGUcCAGCGUCAAG-------------AGGaGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 154750 0.66 0.953514
Target:  5'- cGUCCgacGGcGUCGCGGUgcccgUCUCC-CCGUg- -3'
miRNA:   3'- -CAGG---UC-CAGCGUCA-----AGAGGaGGCAgc -5'
9016 3' -56.4 NC_002512.2 + 226192 0.66 0.949572
Target:  5'- -aCCGGGUCGa------CCUCCGUCGg -3'
miRNA:   3'- caGGUCCAGCgucaagaGGAGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 94968 0.66 0.945415
Target:  5'- cGUUCAGGUggcUGCGGaUCgCC-CCGUCGa -3'
miRNA:   3'- -CAGGUCCA---GCGUCaAGaGGaGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 20573 0.66 0.944125
Target:  5'- cGUCCAGGUcgacccugacgcCGCcGUUCUCCUUgacgcagcgcuccaCGUCc -3'
miRNA:   3'- -CAGGUCCA------------GCGuCAAGAGGAG--------------GCAGc -5'
9016 3' -56.4 NC_002512.2 + 44895 0.66 0.941038
Target:  5'- -aCCGGGcCGCAGcgCUCa--CGUCGa -3'
miRNA:   3'- caGGUCCaGCGUCaaGAGgagGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 125742 0.66 0.941038
Target:  5'- uGUCCGGGUCGCG--UCcCCcagcCCGUCc -3'
miRNA:   3'- -CAGGUCCAGCGUcaAGaGGa---GGCAGc -5'
9016 3' -56.4 NC_002512.2 + 220919 0.66 0.941038
Target:  5'- cGUCCAG--UGCGGgaugCUCCgcuaCCGUCGg -3'
miRNA:   3'- -CAGGUCcaGCGUCaa--GAGGa---GGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 180136 0.67 0.931622
Target:  5'- cGUCCAGcGUCggGCGGUccaggacggCCUCCGUCc -3'
miRNA:   3'- -CAGGUC-CAG--CGUCAaga------GGAGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 108492 0.67 0.931622
Target:  5'- -gCCAGG-CGCGGcUCcgUCCggCCGUCGc -3'
miRNA:   3'- caGGUCCaGCGUCaAG--AGGa-GGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 107321 0.67 0.931622
Target:  5'- uGUUgGGGg-GCAgGUUCacgUCCUCCGUCGc -3'
miRNA:   3'- -CAGgUCCagCGU-CAAG---AGGAGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 127016 0.67 0.929632
Target:  5'- gGUCCGGG-CGCGuUUCUCCgacaagagcgugcCCGUCu -3'
miRNA:   3'- -CAGGUCCaGCGUcAAGAGGa------------GGCAGc -5'
9016 3' -56.4 NC_002512.2 + 111837 0.67 0.92658
Target:  5'- gGUCCGguGGUCGUAGagCgCCgCCGUCGc -3'
miRNA:   3'- -CAGGU--CCAGCGUCaaGaGGaGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 1364 0.67 0.92658
Target:  5'- cGUCCucGUCGCcuccGUcUCUCCUCCG-CGu -3'
miRNA:   3'- -CAGGucCAGCGu---CA-AGAGGAGGCaGC- -5'
9016 3' -56.4 NC_002512.2 + 209968 0.67 0.92658
Target:  5'- gGUCCucaAGGUCGCcaacggcuucccGGggUUCCUCCG-CGa -3'
miRNA:   3'- -CAGG---UCCAGCG------------UCaaGAGGAGGCaGC- -5'
9016 3' -56.4 NC_002512.2 + 184406 0.67 0.92658
Target:  5'- -gCCGGGgggCGCucGgcCUUCUCCGUCGc -3'
miRNA:   3'- caGGUCCa--GCGu-CaaGAGGAGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 112275 0.67 0.92658
Target:  5'- cGUCacgauGUCcCGGUUCUCCUUCGUCa -3'
miRNA:   3'- -CAGguc--CAGcGUCAAGAGGAGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 196311 0.67 0.921315
Target:  5'- -cCCAgcGGcCGCGGUUCUCCuuUCCGggugCGu -3'
miRNA:   3'- caGGU--CCaGCGUCAAGAGG--AGGCa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.