miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9030 3' -59.4 NC_002512.2 + 11646 0.65 0.85752
Target:  5'- cGCCGAcCCGGAcauauaucggcgccGCgGCCCGCCgCGGc- -3'
miRNA:   3'- -UGGUUaGGCCU--------------CG-CGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 149515 0.66 0.852279
Target:  5'- gGCCGcggCCGGAGCggGCCgGCCagGAg- -3'
miRNA:   3'- -UGGUua-GGCCUCG--CGGgCGGagCUaa -5'
9030 3' -59.4 NC_002512.2 + 219664 0.66 0.852279
Target:  5'- cGCCcgucggGAUCUGG-GCGCgCCGCC-CGAg- -3'
miRNA:   3'- -UGG------UUAGGCCuCGCG-GGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 72827 0.66 0.852279
Target:  5'- cCCGGaccCCGGGaCGCCCGCCUUGc-- -3'
miRNA:   3'- uGGUUa--GGCCUcGCGGGCGGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 39372 0.66 0.852279
Target:  5'- gACCAgcucGUCgagGGAGUGCCgGCaCUCGAg- -3'
miRNA:   3'- -UGGU----UAGg--CCUCGCGGgCG-GAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 128382 0.66 0.844637
Target:  5'- cCCGucgCCGGcGGCGgacCCCGUCUCGAg- -3'
miRNA:   3'- uGGUua-GGCC-UCGC---GGGCGGAGCUaa -5'
9030 3' -59.4 NC_002512.2 + 156544 0.66 0.844637
Target:  5'- cGCCGGUUCGGAGCGCgugaCgGCUgagCGGa- -3'
miRNA:   3'- -UGGUUAGGCCUCGCG----GgCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 21089 0.66 0.844637
Target:  5'- cCCGcUCCGGGGCGaCCGCCgUCu--- -3'
miRNA:   3'- uGGUuAGGCCUCGCgGGCGG-AGcuaa -5'
9030 3' -59.4 NC_002512.2 + 121377 0.66 0.844637
Target:  5'- gGCCGGUCgGGcGCcggGCCCGgCCUCGc-- -3'
miRNA:   3'- -UGGUUAGgCCuCG---CGGGC-GGAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 91960 0.66 0.84231
Target:  5'- cGCCAgggcggagcggcacGUCCGGAGgGCCgCGUC-CGGg- -3'
miRNA:   3'- -UGGU--------------UAGGCCUCgCGG-GCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 132459 0.66 0.836817
Target:  5'- gGCgGGUCCggGGAGCGCgCGUCUCu--- -3'
miRNA:   3'- -UGgUUAGG--CCUCGCGgGCGGAGcuaa -5'
9030 3' -59.4 NC_002512.2 + 184471 0.66 0.836817
Target:  5'- gGCCGGcgCCGccgucGAGCGCCCGCaCgagCGAc- -3'
miRNA:   3'- -UGGUUa-GGC-----CUCGCGGGCG-Ga--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 139288 0.66 0.836817
Target:  5'- gGCgAAgg-GGGGCGCCCGCCcCGGg- -3'
miRNA:   3'- -UGgUUaggCCUCGCGGGCGGaGCUaa -5'
9030 3' -59.4 NC_002512.2 + 98156 0.66 0.836817
Target:  5'- cACCGGUUCGGcggucccGCGCCCGUCaUCGu-- -3'
miRNA:   3'- -UGGUUAGGCCu------CGCGGGCGG-AGCuaa -5'
9030 3' -59.4 NC_002512.2 + 45224 0.66 0.836817
Target:  5'- cGCCGA-CCGGAuuucggcgcgGCGCCCGCggaCUCGc-- -3'
miRNA:   3'- -UGGUUaGGCCU----------CGCGGGCG---GAGCuaa -5'
9030 3' -59.4 NC_002512.2 + 97307 0.66 0.828825
Target:  5'- cGCCGAacccCUGGccGCGCCCGCCggggUCGAg- -3'
miRNA:   3'- -UGGUUa---GGCCu-CGCGGGCGG----AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 71560 0.66 0.828825
Target:  5'- -aCGGUCCGGAGCGCggacucgCGCCggaCGAc- -3'
miRNA:   3'- ugGUUAGGCCUCGCGg------GCGGa--GCUaa -5'
9030 3' -59.4 NC_002512.2 + 202330 0.66 0.825582
Target:  5'- cGCCAcUCCuacacgcuacuuAGCGCCCGgCUCGAUUg -3'
miRNA:   3'- -UGGUuAGGcc----------UCGCGGGCgGAGCUAA- -5'
9030 3' -59.4 NC_002512.2 + 128089 0.66 0.820668
Target:  5'- aGCCuccUCGGaAGCGCuCCGCCgUCGAg- -3'
miRNA:   3'- -UGGuuaGGCC-UCGCG-GGCGG-AGCUaa -5'
9030 3' -59.4 NC_002512.2 + 208723 0.66 0.820668
Target:  5'- gACCAgAUCgGGAGCGCC-GCCgacCGGa- -3'
miRNA:   3'- -UGGU-UAGgCCUCGCGGgCGGa--GCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.