miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 5' -49.4 NC_002512.2 + 108757 0.66 0.999824
Target:  5'- cGGccGCCgucgACgGGUucGGGUACCgaucggAUAGCc -3'
miRNA:   3'- -CCu-UGGa---UGgCCA--UCCAUGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 62184 0.66 0.999824
Target:  5'- cGGuaGACC-GCCaggugaGGUAGGUucuucuGCUUGUAGCg -3'
miRNA:   3'- -CC--UUGGaUGG------CCAUCCA------UGGAUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 155292 0.66 0.999824
Target:  5'- cGAGCCga-CGG-AGGgccccgGCCUcgAGCa -3'
miRNA:   3'- cCUUGGaugGCCaUCCa-----UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 7755 0.66 0.999776
Target:  5'- cGGAGCCggGgCGGUAGucgGCCgcggagAUGGUg -3'
miRNA:   3'- -CCUUGGa-UgGCCAUCca-UGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 48726 0.66 0.999776
Target:  5'- --uACCUGCUGG-AGG-ACCUGgccGCg -3'
miRNA:   3'- ccuUGGAUGGCCaUCCaUGGAUau-CG- -5'
9031 5' -49.4 NC_002512.2 + 128581 0.66 0.999754
Target:  5'- gGGGGCCgacccugcgagagGCCGGgacguccGGGUACCUGc--- -3'
miRNA:   3'- -CCUUGGa------------UGGCCa------UCCAUGGAUaucg -5'
9031 5' -49.4 NC_002512.2 + 149149 0.66 0.999718
Target:  5'- cGGGACCgccGCgGGgccGGUGCCgcccgcgGGCc -3'
miRNA:   3'- -CCUUGGa--UGgCCau-CCAUGGaua----UCG- -5'
9031 5' -49.4 NC_002512.2 + 109730 0.66 0.999718
Target:  5'- gGGAAgCgcgGCCGGUugcgcGGGU-CCUcgGGUc -3'
miRNA:   3'- -CCUUgGa--UGGCCA-----UCCAuGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 154157 0.66 0.999646
Target:  5'- ---uCCUuCCGGUAggcGGUAcCCUGUGGUu -3'
miRNA:   3'- ccuuGGAuGGCCAU---CCAU-GGAUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 103193 0.66 0.999646
Target:  5'- uGAGCCUGcCCGGcgagcggGGGUAUCcgaGGCg -3'
miRNA:   3'- cCUUGGAU-GGCCa------UCCAUGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 69069 0.66 0.999646
Target:  5'- --cGCCUGCUGGUGccggggcggcuGGUACUgcugccGUGGCu -3'
miRNA:   3'- ccuUGGAUGGCCAU-----------CCAUGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 50521 0.66 0.999646
Target:  5'- uGGACCUGCUGGUGGaGaGCaug-AGCc -3'
miRNA:   3'- cCUUGGAUGGCCAUC-CaUGgauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 125890 0.66 0.999646
Target:  5'- uGGAACCggACCGcGUccaGGGUGCgCgacAGCu -3'
miRNA:   3'- -CCUUGGa-UGGC-CA---UCCAUG-GauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 141434 0.67 0.999549
Target:  5'- gGGAcugccccGCCUGCUGGUccGGGacGCCUGcGGUu -3'
miRNA:   3'- -CCU-------UGGAUGGCCA--UCCa-UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 82226 0.67 0.999453
Target:  5'- gGGAAgCgggGCCGGUGacGGUAgCgggAGCg -3'
miRNA:   3'- -CCUUgGa--UGGCCAU--CCAUgGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 61448 0.67 0.999453
Target:  5'- aGAuCCUGCUGGUGGcccgggaccuGUACCgggugAGCa -3'
miRNA:   3'- cCUuGGAUGGCCAUC----------CAUGGaua--UCG- -5'
9031 5' -49.4 NC_002512.2 + 169251 0.67 0.999453
Target:  5'- aGGGGCCUGuCCuGUGGGUgggaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAU-GGcCAUCCA----UGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 4785 0.67 0.999453
Target:  5'- cGAGCUgcGCCGGUugcgacGGUugCUGcGGCa -3'
miRNA:   3'- cCUUGGa-UGGCCAu-----CCAugGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 169181 0.67 0.999453
Target:  5'- aGGGGCCUGuCCuGUGGGUgggaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAU-GGcCAUCCA----UGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 60272 0.67 0.999341
Target:  5'- uGGACCUGCCGGccgaccugaagaacaAGG-ACCUGUcgucguaccuGGCg -3'
miRNA:   3'- cCUUGGAUGGCCa--------------UCCaUGGAUA----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.