miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 3' -54.3 NC_002512.2 + 78324 0.66 0.977845
Target:  5'- cUCGC-CGGCucuCGGGAAGGCgagaCCGGGAc -3'
miRNA:   3'- aAGCGcGCUGu--GCCCUUUUG----GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 116991 0.66 0.977845
Target:  5'- gUC-CGCGACGCGGcgaccgacGAGAACgCCGGGc -3'
miRNA:   3'- aAGcGCGCUGUGCC--------CUUUUG-GGCUUu -5'
9033 3' -54.3 NC_002512.2 + 97402 0.66 0.977845
Target:  5'- --gGCGCGACgACGcGGAGGCCgGGGAg -3'
miRNA:   3'- aagCGCGCUG-UGCcCUUUUGGgCUUU- -5'
9033 3' -54.3 NC_002512.2 + 194908 0.66 0.977845
Target:  5'- -cCGCGgGACGCGaGGcccagccGGACCCGGu- -3'
miRNA:   3'- aaGCGCgCUGUGC-CCu------UUUGGGCUuu -5'
9033 3' -54.3 NC_002512.2 + 89602 0.66 0.977845
Target:  5'- gUCGCGgGAacgucCGCGGGGcgcucGGGCgCCGAAGa -3'
miRNA:   3'- aAGCGCgCU-----GUGCCCU-----UUUG-GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 79064 0.66 0.97761
Target:  5'- --aGCGCGGCGCGGucgucacGgcGACCCGuGAg -3'
miRNA:   3'- aagCGCGCUGUGCC-------CuuUUGGGCuUU- -5'
9033 3' -54.3 NC_002512.2 + 90958 0.66 0.976407
Target:  5'- --gGCGCGACgauccaccagauccuGCGGGA---CCCGAGc -3'
miRNA:   3'- aagCGCGCUG---------------UGCCCUuuuGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 101369 0.66 0.975411
Target:  5'- gUCGCGCaGCugGaGGAAucuccccACCCGGGc -3'
miRNA:   3'- aAGCGCGcUGugC-CCUUu------UGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 142418 0.66 0.975411
Target:  5'- -aCGaacaGCGACACGGuGAcgcucguCCCGAGAu -3'
miRNA:   3'- aaGCg---CGCUGUGCC-CUuuu----GGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 221275 0.66 0.975411
Target:  5'- -aCGCGgGGCGCguggagggGGGGGAGgCCGggGu -3'
miRNA:   3'- aaGCGCgCUGUG--------CCCUUUUgGGCuuU- -5'
9033 3' -54.3 NC_002512.2 + 199794 0.66 0.975411
Target:  5'- aUCGCGgGACA-GGGAuguuuACCgCGggGg -3'
miRNA:   3'- aAGCGCgCUGUgCCCUuu---UGG-GCuuU- -5'
9033 3' -54.3 NC_002512.2 + 224407 0.66 0.975411
Target:  5'- -aCGCGCGcCACGaGGuc--CCCGAGu -3'
miRNA:   3'- aaGCGCGCuGUGC-CCuuuuGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 101268 0.66 0.972788
Target:  5'- gUCGUggggaGCGuACACGGGcAGGuACCCGGAc -3'
miRNA:   3'- aAGCG-----CGC-UGUGCCC-UUU-UGGGCUUu -5'
9033 3' -54.3 NC_002512.2 + 186536 0.66 0.972788
Target:  5'- -cUGCGUG-CACGGGGccGAGCCCu--- -3'
miRNA:   3'- aaGCGCGCuGUGCCCU--UUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 85568 0.66 0.972788
Target:  5'- --gGCGCGGgaGCGGGAGcGgCCGGGAg -3'
miRNA:   3'- aagCGCGCUg-UGCCCUUuUgGGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 98746 0.66 0.969968
Target:  5'- -aCGgGUGGCGCGGGuuGACgaagacgggcgCCGAGAa -3'
miRNA:   3'- aaGCgCGCUGUGCCCuuUUG-----------GGCUUU- -5'
9033 3' -54.3 NC_002512.2 + 228250 0.66 0.969968
Target:  5'- -aCGUGCcgGACGCGGGGGcgacuGACCgCGGAc -3'
miRNA:   3'- aaGCGCG--CUGUGCCCUU-----UUGG-GCUUu -5'
9033 3' -54.3 NC_002512.2 + 131992 0.66 0.969968
Target:  5'- gUCGCGUgggccgccccgGGCGcCGGGggGACCuCGGc- -3'
miRNA:   3'- aAGCGCG-----------CUGU-GCCCuuUUGG-GCUuu -5'
9033 3' -54.3 NC_002512.2 + 131297 0.66 0.969968
Target:  5'- -aCGCGCGGgAgguCGGGAAGAUCCu--- -3'
miRNA:   3'- aaGCGCGCUgU---GCCCUUUUGGGcuuu -5'
9033 3' -54.3 NC_002512.2 + 204616 0.66 0.969968
Target:  5'- uUUCGCGCuACACgauGGGGAAucaCCGGGAu -3'
miRNA:   3'- -AAGCGCGcUGUG---CCCUUUug-GGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.