miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 167581 0.66 0.907023
Target:  5'- -uUCCCGGUCauccgcCGCCUcugcgacgCCCGGGAc- -3'
miRNA:   3'- gcAGGGCCAGa-----GCGGAa-------GGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 115507 0.66 0.907023
Target:  5'- gGUCgCCGGUCUCcaggGCCgggUCCGAaccGGCu -3'
miRNA:   3'- gCAG-GGCCAGAG----CGGaa-GGGCUc--UCG- -5'
9033 5' -59 NC_002512.2 + 142207 0.66 0.907023
Target:  5'- gCGUCCCGucggucucgacGUCgUCGCCUUCgCG-GAacGCg -3'
miRNA:   3'- -GCAGGGC-----------CAG-AGCGGAAGgGCuCU--CG- -5'
9033 5' -59 NC_002512.2 + 153714 0.66 0.907023
Target:  5'- aCGUCCUGGUCgggucucacggCGCUgUCCgUGGGGGg -3'
miRNA:   3'- -GCAGGGCCAGa----------GCGGaAGG-GCUCUCg -5'
9033 5' -59 NC_002512.2 + 134290 0.66 0.907023
Target:  5'- gGUCCCGGaggaUCGUCUUCgaggacgucgCCGGGgccGGCg -3'
miRNA:   3'- gCAGGGCCag--AGCGGAAG----------GGCUC---UCG- -5'
9033 5' -59 NC_002512.2 + 141496 0.66 0.907023
Target:  5'- uGUCCCGGuUCUCGgaCUaCgUgGAGGGCa -3'
miRNA:   3'- gCAGGGCC-AGAGCg-GAaG-GgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 226484 0.66 0.907023
Target:  5'- cCGgggCCCGGgcgcucccCUCGCCgcgggUCCUGcuGGCg -3'
miRNA:   3'- -GCa--GGGCCa-------GAGCGGa----AGGGCucUCG- -5'
9033 5' -59 NC_002512.2 + 147276 0.66 0.907023
Target:  5'- cCGaCCCGGga-CGCCgcgcgucgUUCCCGGGGGg -3'
miRNA:   3'- -GCaGGGCCagaGCGG--------AAGGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 222967 0.66 0.907023
Target:  5'- gCGUCgugcacuacgcgCCGGUCuuccUCGaCCUgCCgGGGAGCg -3'
miRNA:   3'- -GCAG------------GGCCAG----AGC-GGAaGGgCUCUCG- -5'
9033 5' -59 NC_002512.2 + 45182 0.66 0.907023
Target:  5'- uCGUCCUcggaGGUCUCGaCCgggaCCGGcGGCg -3'
miRNA:   3'- -GCAGGG----CCAGAGC-GGaag-GGCUcUCG- -5'
9033 5' -59 NC_002512.2 + 147664 0.66 0.907023
Target:  5'- cCGUCaCCGGcCcCGCUUcccgcCCCGGGAGg -3'
miRNA:   3'- -GCAG-GGCCaGaGCGGAa----GGGCUCUCg -5'
9033 5' -59 NC_002512.2 + 223132 0.66 0.907023
Target:  5'- aGUCC--GUCaUCGUCUUCCCGAuccAGCg -3'
miRNA:   3'- gCAGGgcCAG-AGCGGAAGGGCUc--UCG- -5'
9033 5' -59 NC_002512.2 + 3149 0.66 0.901137
Target:  5'- cCGgagCCCGGUCcCGCCgucgucgCCCGc-GGCc -3'
miRNA:   3'- -GCa--GGGCCAGaGCGGaa-----GGGCucUCG- -5'
9033 5' -59 NC_002512.2 + 152656 0.66 0.901137
Target:  5'- cCG-CCCGGgcgcucgUUCGCC-UCCCGGucGCu -3'
miRNA:   3'- -GCaGGGCCa------GAGCGGaAGGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 155158 0.66 0.901137
Target:  5'- gGUCgUCGGUCUCGCUcgCUCGcggcgucguGAGCu -3'
miRNA:   3'- gCAG-GGCCAGAGCGGaaGGGCu--------CUCG- -5'
9033 5' -59 NC_002512.2 + 213523 0.66 0.895046
Target:  5'- uCGUCCgGGUCggggUGCC--CUCG-GAGCg -3'
miRNA:   3'- -GCAGGgCCAGa---GCGGaaGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 106340 0.66 0.895046
Target:  5'- --cCCCGG--UCGCUcgUCCCGcGAGCu -3'
miRNA:   3'- gcaGGGCCagAGCGGa-AGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 105323 0.66 0.895046
Target:  5'- aCGUCCCGGgccuccucCUCGCCga--CGAG-GUa -3'
miRNA:   3'- -GCAGGGCCa-------GAGCGGaaggGCUCuCG- -5'
9033 5' -59 NC_002512.2 + 93857 0.66 0.888751
Target:  5'- gGUCgCGGUCUC-CCUU-CCGAGGu- -3'
miRNA:   3'- gCAGgGCCAGAGcGGAAgGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 98284 0.66 0.888751
Target:  5'- gCGggCCGGgcgcuUCUCGCUgaaggacgucuUUCCCGAGGGg -3'
miRNA:   3'- -GCagGGCC-----AGAGCGG-----------AAGGGCUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.