miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9033 5' -59 NC_002512.2 + 192424 0.69 0.755168
Target:  5'- gCGU-CCGGUCUCGuUCUUCCCccgcGGGGUc -3'
miRNA:   3'- -GCAgGGCCAGAGC-GGAAGGGc---UCUCG- -5'
9033 5' -59 NC_002512.2 + 191196 0.67 0.830752
Target:  5'- cCGUCUccuccguCGG-CUCgGUCUUcCCCGGGGGCg -3'
miRNA:   3'- -GCAGG-------GCCaGAG-CGGAA-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 188862 0.67 0.831538
Target:  5'- aG-CCCGGcguucuaaUCUCaGCUc-CCCGAGAGCa -3'
miRNA:   3'- gCaGGGCC--------AGAG-CGGaaGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 188246 0.66 0.875564
Target:  5'- gCGUCuCCGGUCuccauaacUCGCUcUCgCCuGGAGCu -3'
miRNA:   3'- -GCAG-GGCCAG--------AGCGGaAG-GGcUCUCG- -5'
9033 5' -59 NC_002512.2 + 186797 0.67 0.846918
Target:  5'- cCGUCCCcGcugCUCGCCgcgcCCCGGGAc- -3'
miRNA:   3'- -GCAGGGcCa--GAGCGGaa--GGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 184939 0.71 0.651838
Target:  5'- uGUUCgGaGUC-CGCCUggCUCGAGAGCa -3'
miRNA:   3'- gCAGGgC-CAGaGCGGAa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 182784 0.71 0.660487
Target:  5'- gCGUCCgGagcGUCUgCGCgUucgucagUCCCGAGAGCg -3'
miRNA:   3'- -GCAGGgC---CAGA-GCGgA-------AGGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 182655 0.67 0.861608
Target:  5'- gCGUCUCGGcCUCGCCgaacUCCUu-GAuGCg -3'
miRNA:   3'- -GCAGGGCCaGAGCGGa---AGGGcuCU-CG- -5'
9033 5' -59 NC_002512.2 + 170561 0.7 0.687265
Target:  5'- gCGUCCaGGUCgcaguucuccuccgUCGCCgugUCCCGAcccgaguccgucGAGCa -3'
miRNA:   3'- -GCAGGgCCAG--------------AGCGGa--AGGGCU------------CUCG- -5'
9033 5' -59 NC_002512.2 + 167581 0.66 0.907023
Target:  5'- -uUCCCGGUCauccgcCGCCUcugcgacgCCCGGGAc- -3'
miRNA:   3'- gcAGGGCCAGa-----GCGGAa-------GGGCUCUcg -5'
9033 5' -59 NC_002512.2 + 166442 0.69 0.773004
Target:  5'- cCGUCcuCCGGgggCgacggCGCCgggCUCGAGGGCg -3'
miRNA:   3'- -GCAG--GGCCa--Ga----GCGGaa-GGGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 165801 0.72 0.59413
Target:  5'- aCGUCUgGGUCUacaCCUUCCCGuccGAGUa -3'
miRNA:   3'- -GCAGGgCCAGAgc-GGAAGGGCu--CUCG- -5'
9033 5' -59 NC_002512.2 + 165056 0.7 0.6996
Target:  5'- gGUCgUCaGcCUCGUCUUCgCCGAGGGCa -3'
miRNA:   3'- gCAG-GGcCaGAGCGGAAG-GGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 155158 0.66 0.901137
Target:  5'- gGUCgUCGGUCUCGCUcgCUCGcggcgucguGAGCu -3'
miRNA:   3'- gCAG-GGCCAGAGCGGaaGGGCu--------CUCG- -5'
9033 5' -59 NC_002512.2 + 155020 0.68 0.790395
Target:  5'- uCGUCCCGGg--UGCggUUCCG-GAGCg -3'
miRNA:   3'- -GCAGGGCCagaGCGgaAGGGCuCUCG- -5'
9033 5' -59 NC_002512.2 + 153714 0.66 0.907023
Target:  5'- aCGUCCUGGUCgggucucacggCGCUgUCCgUGGGGGg -3'
miRNA:   3'- -GCAGGGCCAGa----------GCGGaAGG-GCUCUCg -5'
9033 5' -59 NC_002512.2 + 153303 0.68 0.781759
Target:  5'- gGUCCgGGUCg-GCCgguUCCCGcuGGGGUg -3'
miRNA:   3'- gCAGGgCCAGagCGGa--AGGGC--UCUCG- -5'
9033 5' -59 NC_002512.2 + 153236 0.67 0.861608
Target:  5'- cCGUCCCGGgCUC-CCUggcaaaCCCGAu-GCg -3'
miRNA:   3'- -GCAGGGCCaGAGcGGAa-----GGGCUcuCG- -5'
9033 5' -59 NC_002512.2 + 152922 0.68 0.823604
Target:  5'- uCGUCUCGGg-UCGCCagagUCGGGAGCg -3'
miRNA:   3'- -GCAGGGCCagAGCGGaag-GGCUCUCG- -5'
9033 5' -59 NC_002512.2 + 152689 0.66 0.875565
Target:  5'- gCGg-CCGGUCUCGUCgcgUCCCcggucGGGGUg -3'
miRNA:   3'- -GCagGGCCAGAGCGGa--AGGGc----UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.