miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 3' -55.1 NC_002512.2 + 195004 0.68 0.941063
Target:  5'- cGCUcCGACCGAa-CCcgUGUCUCGGa- -3'
miRNA:   3'- -CGA-GCUGGCUgcGGuaGUAGAGCCag -5'
9034 3' -55.1 NC_002512.2 + 193318 0.7 0.870994
Target:  5'- uCUCGccgcuUCGGCGCguUCAUCUgCGGUCu -3'
miRNA:   3'- cGAGCu----GGCUGCGguAGUAGA-GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 191192 0.66 0.972944
Target:  5'- --gCGACCGucucCuCCGUCggCUCGGUCu -3'
miRNA:   3'- cgaGCUGGCu---GcGGUAGuaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 189616 0.78 0.455467
Target:  5'- cGCggCGGCCGcACGCgAUCGUCgCGGUCg -3'
miRNA:   3'- -CGa-GCUGGC-UGCGgUAGUAGaGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 188632 0.66 0.977854
Target:  5'- cGCUCGggccgcaagggcGCCGGCGgcggcggcggcCCGUCGUCcgaccgcggCGGUCu -3'
miRNA:   3'- -CGAGC------------UGGCUGC-----------GGUAGUAGa--------GCCAG- -5'
9034 3' -55.1 NC_002512.2 + 188057 0.69 0.90282
Target:  5'- aGCUCGGCCuGCGUCcacagccaggacaucGUCGUCcgcgagaacggcaacUCGGUCg -3'
miRNA:   3'- -CGAGCUGGcUGCGG---------------UAGUAG---------------AGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 186475 0.67 0.953583
Target:  5'- uGCUCGGCCGGCggaucGCCGaguUCGUCcacuacgCGGcCg -3'
miRNA:   3'- -CGAGCUGGCUG-----CGGU---AGUAGa------GCCaG- -5'
9034 3' -55.1 NC_002512.2 + 186299 0.66 0.970214
Target:  5'- cCUCGuCCgcGACGCCGUgGUCaUCGG-Ca -3'
miRNA:   3'- cGAGCuGG--CUGCGGUAgUAG-AGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 184465 0.66 0.970214
Target:  5'- cGCcgCGGCCGGCGCCGcCGUCgagCGc-- -3'
miRNA:   3'- -CGa-GCUGGCUGCGGUaGUAGa--GCcag -5'
9034 3' -55.1 NC_002512.2 + 184415 0.69 0.915738
Target:  5'- cGCUCGGCCuuCuCCGUCGcCUCGGcCg -3'
miRNA:   3'- -CGAGCUGGcuGcGGUAGUaGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 183084 0.67 0.949629
Target:  5'- cCUCGuCCGACGUCGUCuUCagacggaGGUCu -3'
miRNA:   3'- cGAGCuGGCUGCGGUAGuAGag-----CCAG- -5'
9034 3' -55.1 NC_002512.2 + 182622 0.66 0.974744
Target:  5'- gGCUCGgugGCCGcgcgaucuucuccaGCGCCugCGUCUCGGcCu -3'
miRNA:   3'- -CGAGC---UGGC--------------UGCGGuaGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 179485 0.68 0.921253
Target:  5'- uGCuUCGGCgGcgucguCGCCAUCGUCgUCGGcUCa -3'
miRNA:   3'- -CG-AGCUGgCu-----GCGGUAGUAG-AGCC-AG- -5'
9034 3' -55.1 NC_002512.2 + 178590 0.66 0.977854
Target:  5'- gGCUCuucagucuGGCCGcCGCCGa---CUCGGUCg -3'
miRNA:   3'- -CGAG--------CUGGCuGCGGUaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 174148 0.67 0.953583
Target:  5'- cGCUCGAcaCCGugGUCAccgCGUCcCGGg- -3'
miRNA:   3'- -CGAGCU--GGCugCGGUa--GUAGaGCCag -5'
9034 3' -55.1 NC_002512.2 + 172832 0.69 0.904039
Target:  5'- cGUUCGcCCGGCGCCccccgGUCGUCggacgCGGcCu -3'
miRNA:   3'- -CGAGCuGGCUGCGG-----UAGUAGa----GCCaG- -5'
9034 3' -55.1 NC_002512.2 + 172648 0.71 0.816458
Target:  5'- gGCgguagCGGCCugcgggGACGCCcgCGUCUCGGcCc -3'
miRNA:   3'- -CGa----GCUGG------CUGCGGuaGUAGAGCCaG- -5'
9034 3' -55.1 NC_002512.2 + 172260 0.66 0.977854
Target:  5'- uGCUCGcCUcACGCCcg---CUCGGUCg -3'
miRNA:   3'- -CGAGCuGGcUGCGGuaguaGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 171747 0.67 0.949629
Target:  5'- aGCUCGgggcccucGCCcucuCGCC-UCGcUCUCGGUCg -3'
miRNA:   3'- -CGAGC--------UGGcu--GCGGuAGU-AGAGCCAG- -5'
9034 3' -55.1 NC_002512.2 + 169031 0.66 0.975488
Target:  5'- gGCguccgCGAgCGGCGCCggCAUCuccUCGGg- -3'
miRNA:   3'- -CGa----GCUgGCUGCGGuaGUAG---AGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.