Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9034 | 5' | -52.6 | NC_002512.2 | + | 9869 | 0.66 | 0.992912 |
Target: 5'- ---cCCGAGAcGGagcggccucucgaccCGCCGGGCGAGGGg -3' miRNA: 3'- aguaGGUUCUaCC---------------GCGGCCUGCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 47528 | 0.66 | 0.99251 |
Target: 5'- aCAUCCAcgAGAUccaGCaGCCGGGCGcgGAg -3' miRNA: 3'- aGUAGGU--UCUAc--CG-CGGCCUGCuuUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 110345 | 0.66 | 0.99251 |
Target: 5'- aCcgCCAAGcgGGCcaacaGCuCGGACGAc-- -3' miRNA: 3'- aGuaGGUUCuaCCG-----CG-GCCUGCUuuu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 227218 | 0.66 | 0.99251 |
Target: 5'- ---aCCAGGA-GGCGgCGGAcCGGGAGg -3' miRNA: 3'- aguaGGUUCUaCCGCgGCCU-GCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 87809 | 0.66 | 0.992197 |
Target: 5'- gUCGUCgAGGcgGGCgggcggucggagggGCCGaGGCGAAAu -3' miRNA: 3'- -AGUAGgUUCuaCCG--------------CGGC-CUGCUUUu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 101182 | 0.66 | 0.991427 |
Target: 5'- -gGUUCAGGAUGGUGuuGucCGAGAc -3' miRNA: 3'- agUAGGUUCUACCGCggCcuGCUUUu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 4857 | 0.66 | 0.991427 |
Target: 5'- cCAUCgCGGGGUucgccgcgugcGGCGCCGGcUGGAGGa -3' miRNA: 3'- aGUAG-GUUCUA-----------CCGCGGCCuGCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 135523 | 0.66 | 0.991427 |
Target: 5'- aCGUCCugAGGAUGGcCGCCaGGCGc--- -3' miRNA: 3'- aGUAGG--UUCUACC-GCGGcCUGCuuuu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 226233 | 0.66 | 0.991427 |
Target: 5'- gUCggCCGcGAgGGgGCCGGAgGAGGAg -3' miRNA: 3'- -AGuaGGUuCUaCCgCGGCCUgCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 157360 | 0.66 | 0.991427 |
Target: 5'- gCcgCCGAGGUccgGGcCGCCGGGCaGGGAc -3' miRNA: 3'- aGuaGGUUCUA---CC-GCGGCCUG-CUUUu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 86416 | 0.66 | 0.991312 |
Target: 5'- cCGUCUcgccgaGAGAUgacgagcggacggGGCGCgGGACGggGGa -3' miRNA: 3'- aGUAGG------UUCUA-------------CCGCGgCCUGCuuUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 137236 | 0.66 | 0.991312 |
Target: 5'- cCGUCCcGGAUccgcgcgggucccGGCGCCGG-CGGc-- -3' miRNA: 3'- aGUAGGuUCUA-------------CCGCGGCCuGCUuuu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 93806 | 0.66 | 0.990222 |
Target: 5'- gCGUCCGAGccGGCcccccgGCCGGACc---- -3' miRNA: 3'- aGUAGGUUCuaCCG------CGGCCUGcuuuu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 123282 | 0.66 | 0.990222 |
Target: 5'- aCAUCCAgaccuGGAacgUGGCGCggCGGGUGAAGAa -3' miRNA: 3'- aGUAGGU-----UCU---ACCGCG--GCCUGCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 51624 | 0.66 | 0.990222 |
Target: 5'- aCAUCgAAGAcaUGGCGaCGGAccCGGAGAc -3' miRNA: 3'- aGUAGgUUCU--ACCGCgGCCU--GCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 112934 | 0.66 | 0.990222 |
Target: 5'- cUCGUUgcGGAUGGCGCCccGGuCGAGc- -3' miRNA: 3'- -AGUAGguUCUACCGCGG--CCuGCUUuu -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 31651 | 0.66 | 0.990222 |
Target: 5'- cCGUCCcGGAcggcgcgGGCGCggccgugguggCGGACGggGAg -3' miRNA: 3'- aGUAGGuUCUa------CCGCG-----------GCCUGCuuUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 54414 | 0.66 | 0.990222 |
Target: 5'- aCGUCCuGGAcGGCcuGCUGGGgGAAGAg -3' miRNA: 3'- aGUAGGuUCUaCCG--CGGCCUgCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 154367 | 0.66 | 0.990222 |
Target: 5'- ----aCAAGAUGGCGgcuuCCGcGGCGAAAGu -3' miRNA: 3'- aguagGUUCUACCGC----GGC-CUGCUUUU- -5' |
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9034 | 5' | -52.6 | NC_002512.2 | + | 137652 | 0.66 | 0.98889 |
Target: 5'- gUCGUCCGAGucccGGuCGUCGGgcacgaacuGCGAGAAg -3' miRNA: 3'- -AGUAGGUUCua--CC-GCGGCC---------UGCUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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