miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9034 5' -52.6 NC_002512.2 + 9869 0.66 0.992912
Target:  5'- ---cCCGAGAcGGagcggccucucgaccCGCCGGGCGAGGGg -3'
miRNA:   3'- aguaGGUUCUaCC---------------GCGGCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 47528 0.66 0.99251
Target:  5'- aCAUCCAcgAGAUccaGCaGCCGGGCGcgGAg -3'
miRNA:   3'- aGUAGGU--UCUAc--CG-CGGCCUGCuuUU- -5'
9034 5' -52.6 NC_002512.2 + 110345 0.66 0.99251
Target:  5'- aCcgCCAAGcgGGCcaacaGCuCGGACGAc-- -3'
miRNA:   3'- aGuaGGUUCuaCCG-----CG-GCCUGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 227218 0.66 0.99251
Target:  5'- ---aCCAGGA-GGCGgCGGAcCGGGAGg -3'
miRNA:   3'- aguaGGUUCUaCCGCgGCCU-GCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 87809 0.66 0.992197
Target:  5'- gUCGUCgAGGcgGGCgggcggucggagggGCCGaGGCGAAAu -3'
miRNA:   3'- -AGUAGgUUCuaCCG--------------CGGC-CUGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 101182 0.66 0.991427
Target:  5'- -gGUUCAGGAUGGUGuuGucCGAGAc -3'
miRNA:   3'- agUAGGUUCUACCGCggCcuGCUUUu -5'
9034 5' -52.6 NC_002512.2 + 4857 0.66 0.991427
Target:  5'- cCAUCgCGGGGUucgccgcgugcGGCGCCGGcUGGAGGa -3'
miRNA:   3'- aGUAG-GUUCUA-----------CCGCGGCCuGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 135523 0.66 0.991427
Target:  5'- aCGUCCugAGGAUGGcCGCCaGGCGc--- -3'
miRNA:   3'- aGUAGG--UUCUACC-GCGGcCUGCuuuu -5'
9034 5' -52.6 NC_002512.2 + 226233 0.66 0.991427
Target:  5'- gUCggCCGcGAgGGgGCCGGAgGAGGAg -3'
miRNA:   3'- -AGuaGGUuCUaCCgCGGCCUgCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 157360 0.66 0.991427
Target:  5'- gCcgCCGAGGUccgGGcCGCCGGGCaGGGAc -3'
miRNA:   3'- aGuaGGUUCUA---CC-GCGGCCUG-CUUUu -5'
9034 5' -52.6 NC_002512.2 + 86416 0.66 0.991312
Target:  5'- cCGUCUcgccgaGAGAUgacgagcggacggGGCGCgGGACGggGGa -3'
miRNA:   3'- aGUAGG------UUCUA-------------CCGCGgCCUGCuuUU- -5'
9034 5' -52.6 NC_002512.2 + 137236 0.66 0.991312
Target:  5'- cCGUCCcGGAUccgcgcgggucccGGCGCCGG-CGGc-- -3'
miRNA:   3'- aGUAGGuUCUA-------------CCGCGGCCuGCUuuu -5'
9034 5' -52.6 NC_002512.2 + 93806 0.66 0.990222
Target:  5'- gCGUCCGAGccGGCcccccgGCCGGACc---- -3'
miRNA:   3'- aGUAGGUUCuaCCG------CGGCCUGcuuuu -5'
9034 5' -52.6 NC_002512.2 + 123282 0.66 0.990222
Target:  5'- aCAUCCAgaccuGGAacgUGGCGCggCGGGUGAAGAa -3'
miRNA:   3'- aGUAGGU-----UCU---ACCGCG--GCCUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 51624 0.66 0.990222
Target:  5'- aCAUCgAAGAcaUGGCGaCGGAccCGGAGAc -3'
miRNA:   3'- aGUAGgUUCU--ACCGCgGCCU--GCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 112934 0.66 0.990222
Target:  5'- cUCGUUgcGGAUGGCGCCccGGuCGAGc- -3'
miRNA:   3'- -AGUAGguUCUACCGCGG--CCuGCUUuu -5'
9034 5' -52.6 NC_002512.2 + 31651 0.66 0.990222
Target:  5'- cCGUCCcGGAcggcgcgGGCGCggccgugguggCGGACGggGAg -3'
miRNA:   3'- aGUAGGuUCUa------CCGCG-----------GCCUGCuuUU- -5'
9034 5' -52.6 NC_002512.2 + 54414 0.66 0.990222
Target:  5'- aCGUCCuGGAcGGCcuGCUGGGgGAAGAg -3'
miRNA:   3'- aGUAGGuUCUaCCG--CGGCCUgCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 154367 0.66 0.990222
Target:  5'- ----aCAAGAUGGCGgcuuCCGcGGCGAAAGu -3'
miRNA:   3'- aguagGUUCUACCGC----GGC-CUGCUUUU- -5'
9034 5' -52.6 NC_002512.2 + 137652 0.66 0.98889
Target:  5'- gUCGUCCGAGucccGGuCGUCGGgcacgaacuGCGAGAAg -3'
miRNA:   3'- -AGUAGGUUCua--CC-GCGGCC---------UGCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.