miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 223686 0.66 0.739346
Target:  5'- -aGGGCGCCGACAacggcaucGUCCuGGcCGGcGACu -3'
miRNA:   3'- ugCCUGCGGCUGU--------CGGGcUC-GCC-CUG- -5'
9046 5' -63 NC_002512.2 + 81930 0.66 0.739346
Target:  5'- -gGGACGaCGACGGCgaGGGCGGaGGg -3'
miRNA:   3'- ugCCUGCgGCUGUCGggCUCGCC-CUg -5'
9046 5' -63 NC_002512.2 + 217922 0.66 0.739346
Target:  5'- gACGGugGCCcGCgucuucguggGGaCCgGGGCGGGGa -3'
miRNA:   3'- -UGCCugCGGcUG----------UC-GGgCUCGCCCUg -5'
9046 5' -63 NC_002512.2 + 108431 0.66 0.739346
Target:  5'- gGCGGGCGCgGgGCGGaCCCcucaGGGCuccGGGGCc -3'
miRNA:   3'- -UGCCUGCGgC-UGUC-GGG----CUCG---CCCUG- -5'
9046 5' -63 NC_002512.2 + 143535 0.66 0.738442
Target:  5'- gGCGGccucgucgcCGUCGGCGGCCgcgcgucuccccgCGGGCGGGcCg -3'
miRNA:   3'- -UGCCu--------GCGGCUGUCGG-------------GCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 227673 0.66 0.738442
Target:  5'- aGCGGcgGCGCCGcCGGCgaCCGAgacgacgacggcgGCGGGGg -3'
miRNA:   3'- -UGCC--UGCGGCuGUCG--GGCU-------------CGCCCUg -5'
9046 5' -63 NC_002512.2 + 111266 0.66 0.736633
Target:  5'- cGCGGACgagcuugauGUCGACGucccgcggccagacGCCCGGGgucUGGGACc -3'
miRNA:   3'- -UGCCUG---------CGGCUGU--------------CGGGCUC---GCCCUG- -5'
9046 5' -63 NC_002512.2 + 127537 0.66 0.731185
Target:  5'- cCGGACGaCCGAC-GCCCGGacccggcucgucgucCGGGAg -3'
miRNA:   3'- uGCCUGC-GGCUGuCGGGCUc--------------GCCCUg -5'
9046 5' -63 NC_002512.2 + 218655 0.66 0.730275
Target:  5'- gGCGGACGgaGGCGGauaCCCGGGCacaccGGGCc -3'
miRNA:   3'- -UGCCUGCggCUGUC---GGGCUCGc----CCUG- -5'
9046 5' -63 NC_002512.2 + 101071 0.66 0.730275
Target:  5'- cCGG-CGUCGAgGGCCCGccCGcGGACc -3'
miRNA:   3'- uGCCuGCGGCUgUCGGGCucGC-CCUG- -5'
9046 5' -63 NC_002512.2 + 90402 0.66 0.730275
Target:  5'- uGCcGGCGCCGGCcguGCCCGugaucaggaaGGCGGaGAa -3'
miRNA:   3'- -UGcCUGCGGCUGu--CGGGC----------UCGCC-CUg -5'
9046 5' -63 NC_002512.2 + 99258 0.66 0.730275
Target:  5'- -gGGACGCCccgagGAC-GCCgGAcGCGGGGu -3'
miRNA:   3'- ugCCUGCGG-----CUGuCGGgCU-CGCCCUg -5'
9046 5' -63 NC_002512.2 + 2509 0.66 0.730275
Target:  5'- aACGGAucucccccgaCGCCGGCGGCCC---CGGGcCu -3'
miRNA:   3'- -UGCCU----------GCGGCUGUCGGGcucGCCCuG- -5'
9046 5' -63 NC_002512.2 + 96203 0.66 0.730275
Target:  5'- gGCGGcCGCgaggucggccaCGGCGGCCgCG-GCGGcGGCg -3'
miRNA:   3'- -UGCCuGCG-----------GCUGUCGG-GCuCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 13425 0.66 0.730275
Target:  5'- -gGGACGCCGGCuaccugGGCUUcucgauggagaGGGCGGcGGCg -3'
miRNA:   3'- ugCCUGCGGCUG------UCGGG-----------CUCGCC-CUG- -5'
9046 5' -63 NC_002512.2 + 201835 0.66 0.730275
Target:  5'- -gGGGCuccuuccgcgGCCGGCAGCUCGccUGGGGCc -3'
miRNA:   3'- ugCCUG----------CGGCUGUCGGGCucGCCCUG- -5'
9046 5' -63 NC_002512.2 + 157079 0.66 0.730275
Target:  5'- cCGGGguCGCCGGC-GCCCacGGCGGGcCc -3'
miRNA:   3'- uGCCU--GCGGCUGuCGGGc-UCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 131033 0.66 0.730275
Target:  5'- -aGGGCGUCGG-GGCCgCGGGgGaGGACg -3'
miRNA:   3'- ugCCUGCGGCUgUCGG-GCUCgC-CCUG- -5'
9046 5' -63 NC_002512.2 + 75434 0.66 0.730275
Target:  5'- -gGGACGuCCGGa--UCgGGGCGGGACg -3'
miRNA:   3'- ugCCUGC-GGCUgucGGgCUCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 135910 0.66 0.730275
Target:  5'- cGCGGACGCgcagCGACAcGuCCUGAGuCGGuACg -3'
miRNA:   3'- -UGCCUGCG----GCUGU-C-GGGCUC-GCCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.