miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9046 5' -63 NC_002512.2 + 93014 0.66 0.711921
Target:  5'- gGCGGACG--GGCAGCUgugguuccacaCGgaGGCGGGACg -3'
miRNA:   3'- -UGCCUGCggCUGUCGG-----------GC--UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 227502 0.66 0.711921
Target:  5'- -gGaGACGCCG-CGaCCCGGGgGGGAg -3'
miRNA:   3'- ugC-CUGCGGCuGUcGGGCUCgCCCUg -5'
9046 5' -63 NC_002512.2 + 99258 0.66 0.730275
Target:  5'- -gGGACGCCccgagGAC-GCCgGAcGCGGGGu -3'
miRNA:   3'- ugCCUGCGG-----CUGuCGGgCU-CGCCCUg -5'
9046 5' -63 NC_002512.2 + 143535 0.66 0.738442
Target:  5'- gGCGGccucgucgcCGUCGGCGGCCgcgcgucuccccgCGGGCGGGcCg -3'
miRNA:   3'- -UGCCu--------GCGGCUGUCGG-------------GCUCGCCCuG- -5'
9046 5' -63 NC_002512.2 + 130071 0.66 0.693334
Target:  5'- gACGGugGCCGcCAGCUCGuAGUacccGACg -3'
miRNA:   3'- -UGCCugCGGCuGUCGGGC-UCGcc--CUG- -5'
9046 5' -63 NC_002512.2 + 205203 0.66 0.702653
Target:  5'- gACGaGACccccgcCCGAgCGGCCCGGGacggagauCGGGACg -3'
miRNA:   3'- -UGC-CUGc-----GGCU-GUCGGGCUC--------GCCCUG- -5'
9046 5' -63 NC_002512.2 + 92081 0.66 0.711921
Target:  5'- gACGGACgGCCGccggacgcGCGGCCCgccGAGCGccGACc -3'
miRNA:   3'- -UGCCUG-CGGC--------UGUCGGG---CUCGCc-CUG- -5'
9046 5' -63 NC_002512.2 + 227673 0.66 0.738442
Target:  5'- aGCGGcgGCGCCGcCGGCgaCCGAgacgacgacggcgGCGGGGg -3'
miRNA:   3'- -UGCC--UGCGGCuGUCG--GGCU-------------CGCCCUg -5'
9046 5' -63 NC_002512.2 + 220209 0.66 0.702653
Target:  5'- -gGGGC-CCGACggcGGCCCG-G-GGGACg -3'
miRNA:   3'- ugCCUGcGGCUG---UCGGGCuCgCCCUG- -5'
9046 5' -63 NC_002512.2 + 223686 0.66 0.739346
Target:  5'- -aGGGCGCCGACAacggcaucGUCCuGGcCGGcGACu -3'
miRNA:   3'- ugCCUGCGGCUGU--------CGGGcUC-GCC-CUG- -5'
9046 5' -63 NC_002512.2 + 87857 0.66 0.711921
Target:  5'- gGCGGGuCGCCGGCc-CCCGGccGCGGaagaGACg -3'
miRNA:   3'- -UGCCU-GCGGCUGucGGGCU--CGCC----CUG- -5'
9046 5' -63 NC_002512.2 + 179989 0.66 0.711921
Target:  5'- -gGGACaGCgCG-UGGCCCGugaucccccAGCGGGACu -3'
miRNA:   3'- ugCCUG-CG-GCuGUCGGGC---------UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 209871 0.66 0.721131
Target:  5'- -gGGACGCCGGCuacuacguGGUCgGucGCGGGGa -3'
miRNA:   3'- ugCCUGCGGCUG--------UCGGgCu-CGCCCUg -5'
9046 5' -63 NC_002512.2 + 90402 0.66 0.730275
Target:  5'- uGCcGGCGCCGGCcguGCCCGugaucaggaaGGCGGaGAa -3'
miRNA:   3'- -UGcCUGCGGCUGu--CGGGC----------UCGCC-CUg -5'
9046 5' -63 NC_002512.2 + 101071 0.66 0.730275
Target:  5'- cCGG-CGUCGAgGGCCCGccCGcGGACc -3'
miRNA:   3'- uGCCuGCGGCUgUCGGGCucGC-CCUG- -5'
9046 5' -63 NC_002512.2 + 111266 0.66 0.736633
Target:  5'- cGCGGACgagcuugauGUCGACGucccgcggccagacGCCCGGGgucUGGGACc -3'
miRNA:   3'- -UGCCUG---------CGGCUGU--------------CGGGCUC---GCCCUG- -5'
9046 5' -63 NC_002512.2 + 214880 0.66 0.683033
Target:  5'- uACGucUGCCu-CAGCCCGGacaagcuGCGGGACu -3'
miRNA:   3'- -UGCcuGCGGcuGUCGGGCU-------CGCCCUG- -5'
9046 5' -63 NC_002512.2 + 225788 0.66 0.6924
Target:  5'- -aGGcuGCGCCGGCcgGGCCgCGGGCggccggguggccuGGGACc -3'
miRNA:   3'- ugCC--UGCGGCUG--UCGG-GCUCG-------------CCCUG- -5'
9046 5' -63 NC_002512.2 + 191018 0.66 0.693334
Target:  5'- cGCGGA--CCGAgGuGCCUGcgaGGCGGGGCg -3'
miRNA:   3'- -UGCCUgcGGCUgU-CGGGC---UCGCCCUG- -5'
9046 5' -63 NC_002512.2 + 138025 0.66 0.702653
Target:  5'- uACGGAUccgacuuccgaGCCGACAuCCU--GCGGGACc -3'
miRNA:   3'- -UGCCUG-----------CGGCUGUcGGGcuCGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.