miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 3' -58.4 NC_002512.2 + 224703 0.67 0.817086
Target:  5'- uGCC-CGCCCugCugGGGccGGCCgCCGc -3'
miRNA:   3'- uUGGaGUGGGugGugCCU--UUGGgGGU- -5'
9047 3' -58.4 NC_002512.2 + 222575 0.71 0.62929
Target:  5'- cGCCgcgGCCCGCCgucGCGGAGgaggccuguccgGCCCCCGg -3'
miRNA:   3'- uUGGag-UGGGUGG---UGCCUU------------UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 222514 0.7 0.688389
Target:  5'- cGCCUggcCGCCCGCCGCGGccGCCgUCGc -3'
miRNA:   3'- uUGGA---GUGGGUGGUGCCuuUGGgGGU- -5'
9047 3' -58.4 NC_002512.2 + 222424 0.71 0.609528
Target:  5'- gGGCCggcaGCCgCGCCGCGGcuuCCCCCGg -3'
miRNA:   3'- -UUGGag--UGG-GUGGUGCCuuuGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 220419 0.69 0.745908
Target:  5'- gGGCC-CGCCCGCCuACGGccAGCCgCCGg -3'
miRNA:   3'- -UUGGaGUGGGUGG-UGCCu-UUGGgGGU- -5'
9047 3' -58.4 NC_002512.2 + 219375 0.69 0.717455
Target:  5'- cGCCUCugCUcCCugGGcuGCCUCCGc -3'
miRNA:   3'- uUGGAGugGGuGGugCCuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 218196 0.7 0.698133
Target:  5'- uGCCUCGCCC-CU-CGG--GCCCCCGc -3'
miRNA:   3'- uUGGAGUGGGuGGuGCCuuUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 215098 0.68 0.773523
Target:  5'- gGACUUCGuCgCCGCCGCGGccGACCgCCAg -3'
miRNA:   3'- -UUGGAGU-G-GGUGGUGCCu-UUGGgGGU- -5'
9047 3' -58.4 NC_002512.2 + 214980 0.66 0.885095
Target:  5'- aGACCgaCGCCgACCuCGGGAugCCCg- -3'
miRNA:   3'- -UUGGa-GUGGgUGGuGCCUUugGGGgu -5'
9047 3' -58.4 NC_002512.2 + 214718 0.67 0.807805
Target:  5'- uGACUcagCGCCCGCC-CGGGcuucaaaAACCCCUg -3'
miRNA:   3'- -UUGGa--GUGGGUGGuGCCU-------UUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 212987 0.69 0.745908
Target:  5'- cGACCUCAUcgUCGCCGCGGccgucgggcccgGGGCCCUCu -3'
miRNA:   3'- -UUGGAGUG--GGUGGUGCC------------UUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 205186 0.72 0.580019
Target:  5'- -cCCUCGCCCGCguCcucgacGAGACCCCCGc -3'
miRNA:   3'- uuGGAGUGGGUGguGc-----CUUUGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 201806 0.66 0.856739
Target:  5'- cGACCUCuccgccgucuccGCCgCGCC-CGGggGCUCCUu -3'
miRNA:   3'- -UUGGAG------------UGG-GUGGuGCCuuUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 198233 0.67 0.833466
Target:  5'- cGGCCgCGCCCgcGCCGucCGGGAcgGCCUCCAu -3'
miRNA:   3'- -UUGGaGUGGG--UGGU--GCCUU--UGGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 197784 0.67 0.808657
Target:  5'- cGACCUCgaccgcgaggacACCCgggccGCCAuCGGcGACCCCCc -3'
miRNA:   3'- -UUGGAG------------UGGG-----UGGU-GCCuUUGGGGGu -5'
9047 3' -58.4 NC_002512.2 + 197463 0.66 0.871317
Target:  5'- -cCCUCGCCCGCUucgucagcuuCGGGGAgCCCa- -3'
miRNA:   3'- uuGGAGUGGGUGGu---------GCCUUUgGGGgu -5'
9047 3' -58.4 NC_002512.2 + 197317 0.66 0.891672
Target:  5'- cGACCccggCACCCGCgGCgcccggcggcuGGAGAagauCCCCCAc -3'
miRNA:   3'- -UUGGa---GUGGGUGgUG-----------CCUUU----GGGGGU- -5'
9047 3' -58.4 NC_002512.2 + 195342 0.66 0.878308
Target:  5'- uGCgUgACCCGgCGcCGGGAACCCCgGg -3'
miRNA:   3'- uUGgAgUGGGUgGU-GCCUUUGGGGgU- -5'
9047 3' -58.4 NC_002512.2 + 194768 0.67 0.841403
Target:  5'- gGACCUgGUCCGcguCCACGGGAACUCCgAg -3'
miRNA:   3'- -UUGGAgUGGGU---GGUGCCUUUGGGGgU- -5'
9047 3' -58.4 NC_002512.2 + 192629 0.7 0.649061
Target:  5'- cGGCCUCACCUucuacggcaacgGCuCGCGGggGCggcugCCCCAc -3'
miRNA:   3'- -UUGGAGUGGG------------UG-GUGCCuuUG-----GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.