miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9047 5' -59 NC_002512.2 + 226687 0.7 0.740685
Target:  5'- aGCGcCGGGcCgucgcCCGCGGCGG-CGUCg -3'
miRNA:   3'- gCGC-GCCCaGa----GGCGCUGCUaGCAGg -5'
9047 5' -59 NC_002512.2 + 226504 0.68 0.833965
Target:  5'- uCGcCGCGGGUC-CUGCuGGCGGcccugccgcCGUCCu -3'
miRNA:   3'- -GC-GCGCCCAGaGGCG-CUGCUa--------GCAGG- -5'
9047 5' -59 NC_002512.2 + 225590 0.7 0.740685
Target:  5'- gGCGcCGGGUCUUCGaccagcuGGCcgucGUCGUCCg -3'
miRNA:   3'- gCGC-GCCCAGAGGCg------CUGc---UAGCAGG- -5'
9047 5' -59 NC_002512.2 + 224555 0.67 0.863569
Target:  5'- uCGCGgGGGaUUCgGCGACG-UCGUa- -3'
miRNA:   3'- -GCGCgCCCaGAGgCGCUGCuAGCAgg -5'
9047 5' -59 NC_002512.2 + 221413 0.69 0.762227
Target:  5'- gGCgGCGGGUCugUCCgacggccgccauGCGgaccgcggccggggcGCGGUCGUCCg -3'
miRNA:   3'- gCG-CGCCCAG--AGG------------CGC---------------UGCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 220771 0.66 0.908249
Target:  5'- cCGaCGuCGGGUCcauggacCUGCuGGgGAUCGUCCu -3'
miRNA:   3'- -GC-GC-GCCCAGa------GGCG-CUgCUAGCAGG- -5'
9047 5' -59 NC_002512.2 + 220624 0.7 0.713103
Target:  5'- uGUGcCGGGa--CUGCGACGAcgUCGUCCu -3'
miRNA:   3'- gCGC-GCCCagaGGCGCUGCU--AGCAGG- -5'
9047 5' -59 NC_002512.2 + 219814 0.66 0.91921
Target:  5'- aCGCGCGGGg---CGCGACagggGGUCGgucggggggUCCg -3'
miRNA:   3'- -GCGCGCCCagagGCGCUG----CUAGC---------AGG- -5'
9047 5' -59 NC_002512.2 + 218492 0.71 0.666031
Target:  5'- -cCGCGGGUCgUCCGCGucCGAgcCGUCg -3'
miRNA:   3'- gcGCGCCCAG-AGGCGCu-GCUa-GCAGg -5'
9047 5' -59 NC_002512.2 + 216817 0.66 0.918682
Target:  5'- gCGuCGCGGGUCggguacggCUGCGucucgaucaccaGCGugaucucgcccucGUCGUCCg -3'
miRNA:   3'- -GC-GCGCCCAGa-------GGCGC------------UGC-------------UAGCAGG- -5'
9047 5' -59 NC_002512.2 + 214902 0.66 0.900683
Target:  5'- aGCuGCGGGacUUUCUGCGcguccaccgcggccGCGGcuUCGUCCu -3'
miRNA:   3'- gCG-CGCCC--AGAGGCGC--------------UGCU--AGCAGG- -5'
9047 5' -59 NC_002512.2 + 213156 0.66 0.908249
Target:  5'- cCGCucaugGCGGGUCagcUCUGCGuggucggcACGAUCGgcuaCCg -3'
miRNA:   3'- -GCG-----CGCCCAG---AGGCGC--------UGCUAGCa---GG- -5'
9047 5' -59 NC_002512.2 + 212964 0.67 0.856427
Target:  5'- gGCGCcuccgGGGUCgagaUCUGCGACcucAUCGUCg -3'
miRNA:   3'- gCGCG-----CCCAG----AGGCGCUGc--UAGCAGg -5'
9047 5' -59 NC_002512.2 + 211784 0.68 0.801812
Target:  5'- gGCcCGGGUggCCGCGGgGGcCGUCCc -3'
miRNA:   3'- gCGcGCCCAgaGGCGCUgCUaGCAGG- -5'
9047 5' -59 NC_002512.2 + 211039 0.66 0.896468
Target:  5'- uGCGCGGccGUCccccgcuaccUCCGCu-CGcUCGUCCa -3'
miRNA:   3'- gCGCGCC--CAG----------AGGCGcuGCuAGCAGG- -5'
9047 5' -59 NC_002512.2 + 208588 0.67 0.883886
Target:  5'- gCGCaGCGGG--UCCGgGACGAggUCGagguUCCg -3'
miRNA:   3'- -GCG-CGCCCagAGGCgCUGCU--AGC----AGG- -5'
9047 5' -59 NC_002512.2 + 207638 0.68 0.84162
Target:  5'- gGCGUGGuGUUUCCGUuccGGCGGccgugguggCGUCCc -3'
miRNA:   3'- gCGCGCC-CAGAGGCG---CUGCUa--------GCAGG- -5'
9047 5' -59 NC_002512.2 + 206761 0.69 0.776273
Target:  5'- cCGCGCggaacaugGGGUCgUCCaGCG-CGAUCaUCCg -3'
miRNA:   3'- -GCGCG--------CCCAG-AGG-CGCuGCUAGcAGG- -5'
9047 5' -59 NC_002512.2 + 206446 0.66 0.918682
Target:  5'- gGCGCGGugaaguaGUCgCUGCGcACGGccagCGUCCc -3'
miRNA:   3'- gCGCGCC-------CAGaGGCGC-UGCUa---GCAGG- -5'
9047 5' -59 NC_002512.2 + 205890 0.68 0.818183
Target:  5'- gCGuCGCGGGUCcCCGCucGCGGgaccCGUUCa -3'
miRNA:   3'- -GC-GCGCCCAGaGGCGc-UGCUa---GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.