miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 5' -52.3 NC_002512.2 + 228119 0.67 0.989722
Target:  5'- gGCCGCAACguCgUGcUGGGCGCCg- -3'
miRNA:   3'- gCGGCGUUGauGgACuACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 226885 0.68 0.979177
Target:  5'- cCGCCGCGAUcaaauaGA-GAGCACCUCg -3'
miRNA:   3'- -GCGGCGUUGaugga-CUaCUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 225803 0.66 0.994823
Target:  5'- gGCCGCgGGCgGCCgGGUGGccugGgACCUCg -3'
miRNA:   3'- gCGGCG-UUGaUGGaCUACU----UgUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 223288 0.69 0.958594
Target:  5'- cCGCgCGCAGCUACaUGGUGccgccggucGACACCg- -3'
miRNA:   3'- -GCG-GCGUUGAUGgACUAC---------UUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 222649 0.78 0.555456
Target:  5'- cCGCCGCGACggccgGCCgggccGAgGGGCGCCUCg -3'
miRNA:   3'- -GCGGCGUUGa----UGGa----CUaCUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 220558 0.66 0.994016
Target:  5'- aCGCCGU--CUACCUGGccguGCGCCg- -3'
miRNA:   3'- -GCGGCGuuGAUGGACUacu-UGUGGag -5'
9049 5' -52.3 NC_002512.2 + 219134 0.67 0.985153
Target:  5'- gGCCGaCGACgcgcucUACCUGcUGucCACCUCc -3'
miRNA:   3'- gCGGC-GUUG------AUGGACuACuuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 212451 0.69 0.958594
Target:  5'- gGCCGCGACcGCCgcgagGA-GGGCauccGCCUCg -3'
miRNA:   3'- gCGGCGUUGaUGGa----CUaCUUG----UGGAG- -5'
9049 5' -52.3 NC_002512.2 + 211458 0.76 0.667848
Target:  5'- gCGCCuGCGGCUGCCccgGAUccGACACCUCg -3'
miRNA:   3'- -GCGG-CGUUGAUGGa--CUAc-UUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 209853 0.72 0.890854
Target:  5'- gGCUcuuCGGCUGCCUGcgGGACGCCg- -3'
miRNA:   3'- gCGGc--GUUGAUGGACuaCUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 196839 0.67 0.989722
Target:  5'- gGCUGCGGCg----GAUGGACGCCg- -3'
miRNA:   3'- gCGGCGUUGauggaCUACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 188272 0.67 0.984977
Target:  5'- uCGCCuGgAGCUuuuauauACUaacgugUGAUGAGCACCUCc -3'
miRNA:   3'- -GCGG-CgUUGA-------UGG------ACUACUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 182522 0.73 0.82995
Target:  5'- gCGCCGCAGCguCCggugGGUGAACgacacccggaagGCCUCg -3'
miRNA:   3'- -GCGGCGUUGauGGa---CUACUUG------------UGGAG- -5'
9049 5' -52.3 NC_002512.2 + 179234 0.68 0.976834
Target:  5'- gCGCCaGCAGCUggcggGCCgugucGGUGAACAguUCUCg -3'
miRNA:   3'- -GCGG-CGUUGA-----UGGa----CUACUUGU--GGAG- -5'
9049 5' -52.3 NC_002512.2 + 177972 0.67 0.985153
Target:  5'- cCGCCaGCGu---CUUGAUGAuCACCUCc -3'
miRNA:   3'- -GCGG-CGUugauGGACUACUuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 174430 0.66 0.99311
Target:  5'- cCGUCGgGGCUACCacGGUGGuCACCa- -3'
miRNA:   3'- -GCGGCgUUGAUGGa-CUACUuGUGGag -5'
9049 5' -52.3 NC_002512.2 + 172648 0.66 0.994016
Target:  5'- gGCgGUAGCgGCCUGcggGGACGCC-Cg -3'
miRNA:   3'- gCGgCGUUGaUGGACua-CUUGUGGaG- -5'
9049 5' -52.3 NC_002512.2 + 170894 0.66 0.99311
Target:  5'- uCGCCGaCGGCcGCCUGGacacgcuGCGCUUCg -3'
miRNA:   3'- -GCGGC-GUUGaUGGACUacu----UGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 170064 0.68 0.971578
Target:  5'- cCGCCGCGGCcGCCUucuUGGGCcugGCCUg -3'
miRNA:   3'- -GCGGCGUUGaUGGAcu-ACUUG---UGGAg -5'
9049 5' -52.3 NC_002512.2 + 167077 0.68 0.971578
Target:  5'- gGCCGCGACaUGCUgc-UGGcCACCUCc -3'
miRNA:   3'- gCGGCGUUG-AUGGacuACUuGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.