miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 5' -63.8 NC_002512.2 + 201649 0.65 0.709835
Target:  5'- cGCgGCgCGACGgccCCGGCcgcgguuccuucuUcgGCGAGGGCg -3'
miRNA:   3'- -CGgCGgGCUGC---GGCCG-------------A--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 203713 0.66 0.682976
Target:  5'- gGUCGCCC---GCCGGcCUGCGAcacggagacacgGGGCg -3'
miRNA:   3'- -CGGCGGGcugCGGCC-GAUGCU------------CCCGa -5'
9051 5' -63.8 NC_002512.2 + 157148 0.66 0.682976
Target:  5'- --gGCCCGGgGCgGGCgGCGGgccGGGCg -3'
miRNA:   3'- cggCGGGCUgCGgCCGaUGCU---CCCGa -5'
9051 5' -63.8 NC_002512.2 + 145354 1.09 0.001006
Target:  5'- cGCCGCCCGACGCCGGCUACGAGGGCUa -3'
miRNA:   3'- -CGGCGGGCUGCGGCCGAUGCUCCCGA- -5'
9051 5' -63.8 NC_002512.2 + 206546 0.66 0.701542
Target:  5'- cGCCGCaCuCGuacacCGCCGGCggccCG-GGGCg -3'
miRNA:   3'- -CGGCG-G-GCu----GCGGCCGau--GCuCCCGa -5'
9051 5' -63.8 NC_002512.2 + 147605 0.66 0.701542
Target:  5'- cGUCGCCuCGAC-CCGaccCUcgACGGGGGCg -3'
miRNA:   3'- -CGGCGG-GCUGcGGCc--GA--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 227600 0.66 0.69228
Target:  5'- cGCCaCCCGcaGCgGCCGGaggGCGGGcGGCg -3'
miRNA:   3'- -CGGcGGGC--UG-CGGCCga-UGCUC-CCGa -5'
9051 5' -63.8 NC_002512.2 + 207765 0.66 0.69228
Target:  5'- aGCCGCCgcCGugG-UGGUUGCGGGacGGCg -3'
miRNA:   3'- -CGGCGG--GCugCgGCCGAUGCUC--CCGa -5'
9051 5' -63.8 NC_002512.2 + 113719 0.66 0.69228
Target:  5'- --gGuCCCGACGCgGGCgGCGAucugcGGGCc -3'
miRNA:   3'- cggC-GGGCUGCGgCCGaUGCU-----CCCGa -5'
9051 5' -63.8 NC_002512.2 + 220518 0.66 0.682976
Target:  5'- cGUCGCCCGGgaccuggaggaGCU-GCUgcGCGAGGGCg -3'
miRNA:   3'- -CGGCGGGCUg----------CGGcCGA--UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 197986 0.66 0.691351
Target:  5'- aCCGCCCcucucgucuucgcGA-GCgGGCgacggACGGGGGCg -3'
miRNA:   3'- cGGCGGG-------------CUgCGgCCGa----UGCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 112911 0.66 0.69228
Target:  5'- cCCGCCCGgacgggGCGUCGGCggccCGGuGGCg -3'
miRNA:   3'- cGGCGGGC------UGCGGCCGau--GCUcCCGa -5'
9051 5' -63.8 NC_002512.2 + 146689 0.65 0.707996
Target:  5'- cCCGCCCcGCGCgCGGacgGCGAcggagacgacggcgGGGCg -3'
miRNA:   3'- cGGCGGGcUGCG-GCCga-UGCU--------------CCCGa -5'
9051 5' -63.8 NC_002512.2 + 213758 0.66 0.689493
Target:  5'- gGCCGCCCGGCaGaugaucgcggucaaCCGGCUGCuGAcgcuGGGaCg -3'
miRNA:   3'- -CGGCGGGCUG-C--------------GGCCGAUG-CU----CCC-Ga -5'
9051 5' -63.8 NC_002512.2 + 137222 0.65 0.707996
Target:  5'- aGCCGgaucucuccccgguCCCGACGaggacaCCGGCgGCGAGcGCUg -3'
miRNA:   3'- -CGGC--------------GGGCUGC------GGCCGaUGCUCcCGA- -5'
9051 5' -63.8 NC_002512.2 + 182064 0.66 0.69228
Target:  5'- aGCCGCgCCGACcucaGCCgcGGCUcCGGggucuGGGCg -3'
miRNA:   3'- -CGGCG-GGCUG----CGG--CCGAuGCU-----CCCGa -5'
9051 5' -63.8 NC_002512.2 + 158080 0.66 0.682976
Target:  5'- cGCCGCCCGAcugcauCGCCaaCUACGuGGaGUa -3'
miRNA:   3'- -CGGCGGGCU------GCGGccGAUGCuCC-CGa -5'
9051 5' -63.8 NC_002512.2 + 194049 0.66 0.682976
Target:  5'- gGCCGCCUG--GCUGGU---GAGGGCg -3'
miRNA:   3'- -CGGCGGGCugCGGCCGaugCUCCCGa -5'
9051 5' -63.8 NC_002512.2 + 121064 0.65 0.707076
Target:  5'- cGCCGCCCGAgGCgCGGaggaagcggacccacGCGGagauccuguacucGGGCUa -3'
miRNA:   3'- -CGGCGGGCUgCG-GCCga-------------UGCU-------------CCCGA- -5'
9051 5' -63.8 NC_002512.2 + 105141 0.66 0.701542
Target:  5'- cGCCGCaCCcgacgGACGCCGuGUagaucuugGCGAGGGa- -3'
miRNA:   3'- -CGGCG-GG-----CUGCGGC-CGa-------UGCUCCCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.