miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 67731 0.66 0.83483
Target:  5'- --cGCuuuCGCGgUCGGCGUGCcggCCUcGCGa -3'
miRNA:   3'- ccaCGu--GCGCaAGCCGCGCG---GGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 112894 0.66 0.83483
Target:  5'- -cUGCGUGCGgccgUCGGCcCGCCCggacgggGCGu -3'
miRNA:   3'- ccACGUGCGCa---AGCCGcGCGGGa------CGC- -5'
9073 5' -60.9 NC_002512.2 + 93420 0.66 0.83483
Target:  5'- uGGUGUuCGCGUcguacUCGGCGCggauguagugGCCCcGgGu -3'
miRNA:   3'- -CCACGuGCGCA-----AGCCGCG----------CGGGaCgC- -5'
9073 5' -60.9 NC_002512.2 + 223533 0.66 0.827006
Target:  5'- --gGCACGCGcccgCGGCccGCGgCCCcGCGc -3'
miRNA:   3'- ccaCGUGCGCaa--GCCG--CGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 171676 0.66 0.827006
Target:  5'- --cGCGCGCGg--GGUGCGCgCC-GCGc -3'
miRNA:   3'- ccaCGUGCGCaagCCGCGCG-GGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 181005 0.66 0.827006
Target:  5'- cGUGUugGUGUUCGuGUagagggaggcccGCGUCCUGgGc -3'
miRNA:   3'- cCACGugCGCAAGC-CG------------CGCGGGACgC- -5'
9073 5' -60.9 NC_002512.2 + 165492 0.66 0.827006
Target:  5'- gGGUgGCuGCGCGUggGGCGCuucuCCCgGCGc -3'
miRNA:   3'- -CCA-CG-UGCGCAagCCGCGc---GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 75632 0.66 0.827006
Target:  5'- cGG-GCACGCGcacgCGG-GCGCUC-GCGc -3'
miRNA:   3'- -CCaCGUGCGCaa--GCCgCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 90945 0.66 0.826215
Target:  5'- cGGgGCGUGCGUg-GGCGCGacgauccaccagaUCCUGCGg -3'
miRNA:   3'- -CCaCGUGCGCAagCCGCGC-------------GGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 211351 0.66 0.825423
Target:  5'- gGGgacGCGCGCGgccugaccgccCGGCGCGgCaugCUGCGg -3'
miRNA:   3'- -CCa--CGUGCGCaa---------GCCGCGCgG---GACGC- -5'
9073 5' -60.9 NC_002512.2 + 116880 0.66 0.819027
Target:  5'- uGUGguCGCGgcuggCGGCGgGgCCgggGCGg -3'
miRNA:   3'- cCACguGCGCaa---GCCGCgCgGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 136222 0.66 0.819027
Target:  5'- uGGUGCGCGgGggUCaGCGUGCUggGCu -3'
miRNA:   3'- -CCACGUGCgCa-AGcCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 101603 0.66 0.819027
Target:  5'- cGUGCGgGCGgccgUCGGCccgGCGCCgggacGCGa -3'
miRNA:   3'- cCACGUgCGCa---AGCCG---CGCGGga---CGC- -5'
9073 5' -60.9 NC_002512.2 + 6344 0.66 0.819027
Target:  5'- cGG-GCGCGgGgcCGGCGgGCCgCggGCGc -3'
miRNA:   3'- -CCaCGUGCgCaaGCCGCgCGG-Ga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 152455 0.66 0.819027
Target:  5'- cGG-GCGCGCGgcguugggaGGCGUcccggGUCCUGUGa -3'
miRNA:   3'- -CCaCGUGCGCaag------CCGCG-----CGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 47819 0.66 0.819027
Target:  5'- cGGaGC-CGCGgcugaggUCGGCGCGgcuggccgacaUCCUGCa -3'
miRNA:   3'- -CCaCGuGCGCa------AGCCGCGC-----------GGGACGc -5'
9073 5' -60.9 NC_002512.2 + 145615 0.66 0.8109
Target:  5'- --gGCGgGCGUUCGGCccGCuGCCCgccuuccGCGu -3'
miRNA:   3'- ccaCGUgCGCAAGCCG--CG-CGGGa------CGC- -5'
9073 5' -60.9 NC_002512.2 + 147470 0.66 0.8109
Target:  5'- -cUGCugGUcUUCGcGCGgGCgCUGCGg -3'
miRNA:   3'- ccACGugCGcAAGC-CGCgCGgGACGC- -5'
9073 5' -60.9 NC_002512.2 + 88608 0.66 0.805954
Target:  5'- cGUGCGCGCGgccggcgUCGGgacgaacguggucguCGCGCUguucuUUGCGg -3'
miRNA:   3'- cCACGUGCGCa------AGCC---------------GCGCGG-----GACGC- -5'
9073 5' -60.9 NC_002512.2 + 218885 0.66 0.80263
Target:  5'- cGUGCGCGCccUCaucGCGCGCCaCgcgggGCGg -3'
miRNA:   3'- cCACGUGCGcaAGc--CGCGCGG-Ga----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.