miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 53613 0.66 0.993507
Target:  5'- gCCCuggaCCCGAAGcGGAucgUCGGCGgGGaGAa -3'
miRNA:   3'- -GGG----GGGCUUUuUCU---AGCCGUgCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 72115 0.66 0.993507
Target:  5'- cCCCCCCGAAuuucauagacccGAAGAUCuGUACa---- -3'
miRNA:   3'- -GGGGGGCUU------------UUUCUAGcCGUGccacu -5'
9095 3' -53.4 NC_002512.2 + 12379 0.66 0.993507
Target:  5'- aCCCCCCGAGcucgccuucGggCGGCgGCGGcGGc -3'
miRNA:   3'- -GGGGGGCUUuuu------CuaGCCG-UGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 23082 0.66 0.993507
Target:  5'- aCCCCguuCCGGAucccGGAGuUCGGCguGCGGaUGAu -3'
miRNA:   3'- -GGGG---GGCUU----UUUCuAGCCG--UGCC-ACU- -5'
9095 3' -53.4 NC_002512.2 + 94835 0.66 0.993507
Target:  5'- gCCgCCgGAGGAAGAgcgUGGCcGCGGcGAg -3'
miRNA:   3'- -GGgGGgCUUUUUCUa--GCCG-UGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 56449 0.66 0.992567
Target:  5'- cUCCCCCGAGugcGAGAcgaGGCGCGcGa-- -3'
miRNA:   3'- -GGGGGGCUUu--UUCUag-CCGUGC-Cacu -5'
9095 3' -53.4 NC_002512.2 + 28218 0.66 0.992567
Target:  5'- cCCUCgCCGAAGAAGGaaccgCGGC-CGGg-- -3'
miRNA:   3'- -GGGG-GGCUUUUUCUa----GCCGuGCCacu -5'
9095 3' -53.4 NC_002512.2 + 151778 0.66 0.992468
Target:  5'- uCUCCCCGGGAGGGuuUUGGUcucucggGCGGUcGGg -3'
miRNA:   3'- -GGGGGGCUUUUUCu-AGCCG-------UGCCA-CU- -5'
9095 3' -53.4 NC_002512.2 + 65717 0.66 0.991954
Target:  5'- gCCCCgGAGAuAGggCGGgguguccucgaugauCugGGUGAa -3'
miRNA:   3'- gGGGGgCUUUuUCuaGCC---------------GugCCACU- -5'
9095 3' -53.4 NC_002512.2 + 20938 0.66 0.991522
Target:  5'- ---aCgGAGGAGGAcgcagUGGCACGGUGAg -3'
miRNA:   3'- ggggGgCUUUUUCUa----GCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 94081 0.66 0.991522
Target:  5'- uCCCCCCGcGAcGGcggCGGC-CGGUc- -3'
miRNA:   3'- -GGGGGGCuUUuUCua-GCCGuGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 98554 0.66 0.991522
Target:  5'- uCUCCUCGcAGAGGGUCGG-ACGGccguUGAu -3'
miRNA:   3'- -GGGGGGCuUUUUCUAGCCgUGCC----ACU- -5'
9095 3' -53.4 NC_002512.2 + 4432 0.66 0.991522
Target:  5'- -gCCCUGAAAGuguUCGGUACGGa-- -3'
miRNA:   3'- ggGGGGCUUUUucuAGCCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 73965 0.66 0.991522
Target:  5'- gCUCCCGAAgcugGAGGAcgcgUCGGCGcCGGa-- -3'
miRNA:   3'- gGGGGGCUU----UUUCU----AGCCGU-GCCacu -5'
9095 3' -53.4 NC_002512.2 + 88909 0.66 0.990365
Target:  5'- gCCCCCCGAucc-GAUCGGuCACc---- -3'
miRNA:   3'- -GGGGGGCUuuuuCUAGCC-GUGccacu -5'
9095 3' -53.4 NC_002512.2 + 24800 0.66 0.990365
Target:  5'- gCCCCCCGAGGAcGGAUCGcCGCc---- -3'
miRNA:   3'- -GGGGGGCUUUU-UCUAGCcGUGccacu -5'
9095 3' -53.4 NC_002512.2 + 126076 0.66 0.989994
Target:  5'- -aCCCCGAcguccgggaacucgGAcgugaucaccGAGGUCGGC-CGGUGu -3'
miRNA:   3'- ggGGGGCU--------------UU----------UUCUAGCCGuGCCACu -5'
9095 3' -53.4 NC_002512.2 + 87869 0.66 0.989612
Target:  5'- gCCCCCggccgCGGAAGAGA-CGGCcgccggaucgcccaaACGcGUGAg -3'
miRNA:   3'- -GGGGG-----GCUUUUUCUaGCCG---------------UGC-CACU- -5'
9095 3' -53.4 NC_002512.2 + 28138 0.67 0.987679
Target:  5'- gUCCCCCG----GGAUCGGCGCc---- -3'
miRNA:   3'- -GGGGGGCuuuuUCUAGCCGUGccacu -5'
9095 3' -53.4 NC_002512.2 + 7454 0.67 0.986136
Target:  5'- -gCCCgGggGAAGccgCGGCGCGGcUGc -3'
miRNA:   3'- ggGGGgCuuUUUCua-GCCGUGCC-ACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.