miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 89652 0.66 0.972521
Target:  5'- cGGACGAA-GCGGUCGaCGUacucGACGUg -3'
miRNA:   3'- -UUUGCUUgCGCCAGC-GCAgc--CUGCAg -5'
9101 3' -55.5 NC_002512.2 + 95978 0.66 0.972521
Target:  5'- uGGCGcAGCgGCGGUCgGCGUCcGGCGcCg -3'
miRNA:   3'- uUUGC-UUG-CGCCAG-CGCAGcCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 18838 0.66 0.972521
Target:  5'- cGAGCGAGCGgaGGUaGCGggGGACGg- -3'
miRNA:   3'- -UUUGCUUGCg-CCAgCGCagCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 151838 0.66 0.972521
Target:  5'- cGGAUGAAUGCccgCGUGUCGGACa-- -3'
miRNA:   3'- -UUUGCUUGCGccaGCGCAGCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 124312 0.66 0.972521
Target:  5'- gGAGCuGAuCGgGGcCGCGgCGGACGUg -3'
miRNA:   3'- -UUUG-CUuGCgCCaGCGCaGCCUGCAg -5'
9101 3' -55.5 NC_002512.2 + 11087 0.66 0.972521
Target:  5'- gGAGCGGACgGCGGUgucgucCGCcUCGGccuCGUCc -3'
miRNA:   3'- -UUUGCUUG-CGCCA------GCGcAGCCu--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 127636 0.66 0.969759
Target:  5'- cGAGCGAAagggauCG-GGUCGC-UCGGACGg- -3'
miRNA:   3'- -UUUGCUU------GCgCCAGCGcAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 8420 0.66 0.969759
Target:  5'- gGAACGcgcacCGCGGcCG-GUCGGACGa- -3'
miRNA:   3'- -UUUGCuu---GCGCCaGCgCAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 86649 0.66 0.966803
Target:  5'- uGGugGAuCGCGGUggcCGCGUccgagCGGACGg- -3'
miRNA:   3'- -UUugCUuGCGCCA---GCGCA-----GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 7366 0.66 0.966803
Target:  5'- -cGCGAcgGCGGcCGCGgCGGGCGg- -3'
miRNA:   3'- uuUGCUugCGCCaGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 105061 0.66 0.966803
Target:  5'- cGGCGAcgGCGG-CGUGUCGGGguaGUCu -3'
miRNA:   3'- uUUGCUugCGCCaGCGCAGCCUg--CAG- -5'
9101 3' -55.5 NC_002512.2 + 32395 0.66 0.966803
Target:  5'- -cACGAACGC-GUCGUGUCcGAUGg- -3'
miRNA:   3'- uuUGCUUGCGcCAGCGCAGcCUGCag -5'
9101 3' -55.5 NC_002512.2 + 120827 0.66 0.966803
Target:  5'- ---gGGACGCGG-CGgGUCcGGuCGUCc -3'
miRNA:   3'- uuugCUUGCGCCaGCgCAG-CCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 119763 0.66 0.966803
Target:  5'- cGAGCGAcgcguCGCGGUCGaCGgCGGGgacccagaacCGUCu -3'
miRNA:   3'- -UUUGCUu----GCGCCAGC-GCaGCCU----------GCAG- -5'
9101 3' -55.5 NC_002512.2 + 223916 0.66 0.966803
Target:  5'- -cGCGGGCGagaGGUCGaGcCGGACGg- -3'
miRNA:   3'- uuUGCUUGCg--CCAGCgCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 154641 0.66 0.96365
Target:  5'- gGGACgGGACGCGGcCGCGcUCGucaccgcgacGGCGUUa -3'
miRNA:   3'- -UUUG-CUUGCGCCaGCGC-AGC----------CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 57194 0.66 0.96365
Target:  5'- -cGCGGcaGCGGUCGCG-CaGGACGg- -3'
miRNA:   3'- uuUGCUugCGCCAGCGCaG-CCUGCag -5'
9101 3' -55.5 NC_002512.2 + 10425 0.66 0.96365
Target:  5'- -cACGAcCGCGucGUCGcCGUCGGGCa-- -3'
miRNA:   3'- uuUGCUuGCGC--CAGC-GCAGCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 181951 0.66 0.96365
Target:  5'- aGAACGGaaACGUaGUCuuagGCGUCGGgaACGUCa -3'
miRNA:   3'- -UUUGCU--UGCGcCAG----CGCAGCC--UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 86435 0.66 0.96365
Target:  5'- cGAGCGGACGgGG-CGCGggacgggGGACGg- -3'
miRNA:   3'- -UUUGCUUGCgCCaGCGCag-----CCUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.