miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 5' -51.4 NC_002512.2 + 209284 0.65 0.997742
Target:  5'- -aGGACGUGGAgcgcugcgucaaggAGAacGGcgGCGUCAGGg -3'
miRNA:   3'- caUCUGCAUCU--------------UCU--CCaaCGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 63609 0.66 0.997457
Target:  5'- cGUAGugGUAGGcgaugacguuaAGAGGUcccugacgaGCGCCGu- -3'
miRNA:   3'- -CAUCugCAUCU-----------UCUCCAa--------CGCGGUcu -5'
9112 5' -51.4 NC_002512.2 + 89068 0.66 0.997457
Target:  5'- -aGGAgcUGUAGAAGAGGUacaugGCggagaagagcagGCCGGAg -3'
miRNA:   3'- caUCU--GCAUCUUCUCCAa----CG------------CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 169797 0.66 0.997457
Target:  5'- --cGGCGUGGGAGGGGUcugaucugUGgGUgGGGg -3'
miRNA:   3'- cauCUGCAUCUUCUCCA--------ACgCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 111711 0.66 0.997457
Target:  5'- aUGGGCuGUAGAAGcucGGGUUGUGucCCAGc -3'
miRNA:   3'- cAUCUG-CAUCUUC---UCCAACGC--GGUCu -5'
9112 5' -51.4 NC_002512.2 + 82429 0.66 0.997457
Target:  5'- --cGGCGgagGGGAcGAGGggGCGUCGGu -3'
miRNA:   3'- cauCUGCa--UCUU-CUCCaaCGCGGUCu -5'
9112 5' -51.4 NC_002512.2 + 88259 0.66 0.996999
Target:  5'- --cGGCGguguuGGAGAGGUgGCGgCAGGc -3'
miRNA:   3'- cauCUGCau---CUUCUCCAaCGCgGUCU- -5'
9112 5' -51.4 NC_002512.2 + 103354 0.66 0.996999
Target:  5'- -cGGACGgcacGGucGAGGUcagGCcGCCGGAg -3'
miRNA:   3'- caUCUGCa---UCuuCUCCAa--CG-CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 83421 0.66 0.996849
Target:  5'- --cGugGUGGguGAGGUucuccggccugaagUGCGcCCGGAc -3'
miRNA:   3'- cauCugCAUCuuCUCCA--------------ACGC-GGUCU- -5'
9112 5' -51.4 NC_002512.2 + 86119 0.66 0.996475
Target:  5'- -cGGGCGcGGAGGAGGUcGCGgacCUGGAa -3'
miRNA:   3'- caUCUGCaUCUUCUCCAaCGC---GGUCU- -5'
9112 5' -51.4 NC_002512.2 + 195723 0.66 0.996475
Target:  5'- --cGACGUGGAAGGGGa---GCgGGAa -3'
miRNA:   3'- cauCUGCAUCUUCUCCaacgCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 53827 0.66 0.996418
Target:  5'- --cGGCGUacaAGAgagacccGGGGGcgGCGCCGGGa -3'
miRNA:   3'- cauCUGCA---UCU-------UCUCCaaCGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 95223 0.66 0.995877
Target:  5'- cGUuGuCGUAGAaaucguucuccGGAGGggGCGuCCGGAg -3'
miRNA:   3'- -CAuCuGCAUCU-----------UCUCCaaCGC-GGUCU- -5'
9112 5' -51.4 NC_002512.2 + 14399 0.66 0.995877
Target:  5'- -gAGGCGaAGuAGAGcagGCGCCAGGa -3'
miRNA:   3'- caUCUGCaUCuUCUCcaaCGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 227943 0.66 0.995877
Target:  5'- -cGGACG-AGgcGGGGgaGCGCgGGGg -3'
miRNA:   3'- caUCUGCaUCuuCUCCaaCGCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 95782 0.66 0.995877
Target:  5'- -gGGGCGUccGAGcGGUagGCGCCGGGg -3'
miRNA:   3'- caUCUGCAucUUCuCCAa-CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 112664 0.66 0.995198
Target:  5'- aGUAGAagcgGUGGAAGGGGaucgGgGUCAGGu -3'
miRNA:   3'- -CAUCUg---CAUCUUCUCCaa--CgCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 211774 0.67 0.99357
Target:  5'- -aGGACGUGGAGGcccGGGUgGcCGCgGGGg -3'
miRNA:   3'- caUCUGCAUCUUC---UCCAaC-GCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 99884 0.67 0.993292
Target:  5'- cUGGACcgGGAGGAGGcgcggcccgucgaggGCGCCGGGg -3'
miRNA:   3'- cAUCUGcaUCUUCUCCaa-------------CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 103465 0.67 0.991526
Target:  5'- -cGGGCGggaggAGGAGAGGcgGCGUCGa- -3'
miRNA:   3'- caUCUGCa----UCUUCUCCaaCGCGGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.