miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 97000 0.65 0.984911
Target:  5'- -----cGCCGGGGAcgccgUCGUCGAuuuccuccgcggACGGCa -3'
miRNA:   3'- gcuuccUGGCCCCU-----AGCAGCU------------UGCUG- -5'
9117 5' -55 NC_002512.2 + 28341 0.65 0.984911
Target:  5'- gCGGAGGAgCGGaagcGGAUCcuGUCGAACc-- -3'
miRNA:   3'- -GCUUCCUgGCC----CCUAG--CAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 221441 0.65 0.984911
Target:  5'- gCGGAccGcGGCCGGGGcgCGgUCGucCGACc -3'
miRNA:   3'- -GCUU--C-CUGGCCCCuaGC-AGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 140991 0.65 0.984911
Target:  5'- cCGAAcGGACCGc-GAUCG-CGAAgGACg -3'
miRNA:   3'- -GCUU-CCUGGCccCUAGCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 119099 0.65 0.984911
Target:  5'- gCGgcGGACCuGGuGGG-CGUCGuguaccGGCGGCg -3'
miRNA:   3'- -GCuuCCUGG-CC-CCUaGCAGC------UUGCUG- -5'
9117 5' -55 NC_002512.2 + 217800 0.65 0.984911
Target:  5'- uGgcGGAUCGGcGucgccgucccGAUCGUCG-ACGGCg -3'
miRNA:   3'- gCuuCCUGGCC-C----------CUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 121041 0.65 0.984911
Target:  5'- -cGAGGACUcGGaGUCGUCGGACG-Cu -3'
miRNA:   3'- gcUUCCUGGcCCcUAGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 108414 0.65 0.984911
Target:  5'- gGGAGGA-CGGGGA-CGgcggCGGGCG-Cg -3'
miRNA:   3'- gCUUCCUgGCCCCUaGCa---GCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 135980 0.65 0.984911
Target:  5'- gGGAGGGCgCGGGGuUCGgggGAGgGAUc -3'
miRNA:   3'- gCUUCCUG-GCCCCuAGCag-CUUgCUG- -5'
9117 5' -55 NC_002512.2 + 86400 0.66 0.983867
Target:  5'- uGAAcGGACgGGGGGUCcGUcucgccgagagaugaCGAGCgGACg -3'
miRNA:   3'- gCUU-CCUGgCCCCUAG-CA---------------GCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 161500 0.66 0.983141
Target:  5'- aGGAGGACCuGGuGcgCugcgCGGACGGCa -3'
miRNA:   3'- gCUUCCUGGcCC-CuaGca--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 226603 0.66 0.983141
Target:  5'- cCGggGGAggaGGGGAcggCGaCGcAGCGACg -3'
miRNA:   3'- -GCuuCCUgg-CCCCUa--GCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 149742 0.66 0.983141
Target:  5'- aGGAGGACgacgaGGGGGaCGaccccgCGAugGACc -3'
miRNA:   3'- gCUUCCUGg----CCCCUaGCa-----GCUugCUG- -5'
9117 5' -55 NC_002512.2 + 90936 0.66 0.983141
Target:  5'- gGgcGcGACCGGGGcgugCGUgGGcGCGACg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCAgCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 90549 0.66 0.983141
Target:  5'- aGGAGGAgCGGGaGGaCGagggCGAggGCGACg -3'
miRNA:   3'- gCUUCCUgGCCC-CUaGCa---GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 54669 0.66 0.983141
Target:  5'- aGAuGGACCGGcGGAcgGUgGAcGCGGCg -3'
miRNA:   3'- gCUuCCUGGCC-CCUagCAgCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 30414 0.66 0.983141
Target:  5'- gGAcgGGGACgCGGGcGUCGUC--GCGGCc -3'
miRNA:   3'- gCU--UCCUG-GCCCcUAGCAGcuUGCUG- -5'
9117 5' -55 NC_002512.2 + 4449 0.66 0.981219
Target:  5'- uGccGGGCgCGGGGGUCGgCGu-CGGCc -3'
miRNA:   3'- gCuuCCUG-GCCCCUAGCaGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 108589 0.66 0.981219
Target:  5'- uCGggGGGCCccGGGGAgCGgCGGccGCGGg -3'
miRNA:   3'- -GCuuCCUGG--CCCCUaGCaGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 83799 0.66 0.981219
Target:  5'- -cGAGGACCGcgucGGGcgCGcCGGcgGCGGCg -3'
miRNA:   3'- gcUUCCUGGC----CCCuaGCaGCU--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.