miRNA display CGI


Results 41 - 60 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 76112 0.75 0.666442
Target:  5'- gCGggGGcGCCGGGGuggUGUCG-AUGACg -3'
miRNA:   3'- -GCuuCC-UGGCCCCua-GCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 77530 0.69 0.914012
Target:  5'- uCGAucGGGACCGGaGAcgccuacgUCG-CGGACGGCg -3'
miRNA:   3'- -GCU--UCCUGGCCcCU--------AGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 79940 0.66 0.979137
Target:  5'- cCGAGGcGGCgCGGGGGUCcgccugccGUCGGaaGCGGu -3'
miRNA:   3'- -GCUUC-CUG-GCCCCUAG--------CAGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 80707 0.67 0.959553
Target:  5'- cCGggGGGCgaGGGcGcgCGggcccgCGGGCGGCa -3'
miRNA:   3'- -GCuuCCUGg-CCC-CuaGCa-----GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 80850 0.68 0.943957
Target:  5'- gCGAgccucGGGACgCGGGGcucggUGUCGGGCGGu -3'
miRNA:   3'- -GCU-----UCCUG-GCCCCua---GCAGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 81844 0.7 0.869164
Target:  5'- cCGGAccGGGUCGGGGAgCGUCGGcgggaaGCGACa -3'
miRNA:   3'- -GCUU--CCUGGCCCCUaGCAGCU------UGCUG- -5'
9117 5' -55 NC_002512.2 + 83799 0.66 0.981219
Target:  5'- -cGAGGACCGcgucGGGcgCGcCGGcgGCGGCg -3'
miRNA:   3'- gcUUCCUGGC----CCCuaGCaGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 86400 0.66 0.983867
Target:  5'- uGAAcGGACgGGGGGUCcGUcucgccgagagaugaCGAGCgGACg -3'
miRNA:   3'- gCUU-CCUGgCCCCUAG-CA---------------GCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 86874 0.72 0.823013
Target:  5'- uGAGGGcGCUGGGGAagaUgG-CGAACGACu -3'
miRNA:   3'- gCUUCC-UGGCCCCU---AgCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 87258 0.68 0.943957
Target:  5'- gCGAGGGGucuCCGGGGAgcgaacacgcggUCGUgGgGugGACg -3'
miRNA:   3'- -GCUUCCU---GGCCCCU------------AGCAgC-UugCUG- -5'
9117 5' -55 NC_002512.2 + 88448 0.68 0.943957
Target:  5'- aCGucGGACCgagcGGGGGcUCGUaCGAACaGACc -3'
miRNA:   3'- -GCuuCCUGG----CCCCU-AGCA-GCUUG-CUG- -5'
9117 5' -55 NC_002512.2 + 90497 0.7 0.883027
Target:  5'- uCGAcGGGAUCGGGGccgaggccggCGgCGGACGACg -3'
miRNA:   3'- -GCU-UCCUGGCCCCua--------GCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 90549 0.66 0.983141
Target:  5'- aGGAGGAgCGGGaGGaCGagggCGAggGCGACg -3'
miRNA:   3'- gCUUCCUgGCCC-CUaGCa---GCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 90936 0.66 0.983141
Target:  5'- gGgcGcGACCGGGGcgugCGUgGGcGCGACg -3'
miRNA:   3'- gCuuC-CUGGCCCCua--GCAgCU-UGCUG- -5'
9117 5' -55 NC_002512.2 + 91802 0.68 0.939519
Target:  5'- uGGAGGACuCGGuGGGUCGUUccugcaGGACcuGACg -3'
miRNA:   3'- gCUUCCUG-GCC-CCUAGCAG------CUUG--CUG- -5'
9117 5' -55 NC_002512.2 + 91981 0.7 0.883027
Target:  5'- cCGGAGGGCCGcguccGGGucucccgCGUCGccGGCGGCg -3'
miRNA:   3'- -GCUUCCUGGC-----CCCua-----GCAGC--UUGCUG- -5'
9117 5' -55 NC_002512.2 + 93756 0.67 0.962928
Target:  5'- aCGGAGGGCUcggagggagggaGGGaGGUCGggagcggaUCGggUGACg -3'
miRNA:   3'- -GCUUCCUGG------------CCC-CUAGC--------AGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 94477 0.77 0.528763
Target:  5'- gCGGAGGagauccaGCCGGGGAcgcagUCGUCGGGCG-Cg -3'
miRNA:   3'- -GCUUCC-------UGGCCCCU-----AGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 96542 0.74 0.686012
Target:  5'- uGAgccGGGGCCGGGGAUCc-CGGACGcCa -3'
miRNA:   3'- gCU---UCCUGGCCCCUAGcaGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 96750 0.68 0.948177
Target:  5'- aCGAGcGAgCGGGGcccCGUCcGAGCGGCg -3'
miRNA:   3'- -GCUUcCUgGCCCCua-GCAG-CUUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.