miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 194023 0.67 0.96908
Target:  5'- gCGAuGGACCGGGaGUCGgCGAuccaGGCc -3'
miRNA:   3'- -GCUuCCUGGCCCcUAGCaGCUug--CUG- -5'
9117 5' -55 NC_002512.2 + 100490 0.66 0.974467
Target:  5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3'
miRNA:   3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 223899 0.66 0.981219
Target:  5'- aGGAGGAgCGGGag-CGgcgCGGGCGAg -3'
miRNA:   3'- gCUUCCUgGCCCcuaGCa--GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 226603 0.66 0.983141
Target:  5'- cCGggGGAggaGGGGAcggCGaCGcAGCGACg -3'
miRNA:   3'- -GCuuCCUgg-CCCCUa--GCaGC-UUGCUG- -5'
9117 5' -55 NC_002512.2 + 96750 0.68 0.948177
Target:  5'- aCGAGcGAgCGGGGcccCGUCcGAGCGGCg -3'
miRNA:   3'- -GCUUcCUgGCCCCua-GCAG-CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 191301 0.67 0.966102
Target:  5'- gCGggGGACgGGGGccgggacgcggGUCGggacgCGGgugccguccGCGACg -3'
miRNA:   3'- -GCuuCCUGgCCCC-----------UAGCa----GCU---------UGCUG- -5'
9117 5' -55 NC_002512.2 + 135026 0.66 0.974467
Target:  5'- aCGAcgccAGGAUCGGGGGccCGUCuGACG-Cg -3'
miRNA:   3'- -GCU----UCCUGGCCCCUa-GCAGcUUGCuG- -5'
9117 5' -55 NC_002512.2 + 221441 0.65 0.984911
Target:  5'- gCGGAccGcGGCCGGGGcgCGgUCGucCGACc -3'
miRNA:   3'- -GCUU--C-CUGGCCCCuaGC-AGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 200424 0.67 0.966102
Target:  5'- aGGAGGACgaggagaaGGGGUCGUCGuAGCG-Ca -3'
miRNA:   3'- gCUUCCUGgc------CCCUAGCAGC-UUGCuG- -5'
9117 5' -55 NC_002512.2 + 140991 0.65 0.984911
Target:  5'- cCGAAcGGACCGc-GAUCG-CGAAgGACg -3'
miRNA:   3'- -GCUU-CCUGGCccCUAGCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 152184 0.66 0.974467
Target:  5'- uCGcAGGACCGGGG-UCcUCGgagaGugGACc -3'
miRNA:   3'- -GCuUCCUGGCCCCuAGcAGC----UugCUG- -5'
9117 5' -55 NC_002512.2 + 166569 0.67 0.96908
Target:  5'- aGggGGAgaaCGGGGAgugUCGggaGAACGGg -3'
miRNA:   3'- gCuuCCUg--GCCCCU---AGCag-CUUGCUg -5'
9117 5' -55 NC_002512.2 + 39548 0.66 0.979137
Target:  5'- uGAAGGACgCGGGacggugccaaGggCGgcgaCGGGCGACa -3'
miRNA:   3'- gCUUCCUG-GCCC----------CuaGCa---GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 136440 0.66 0.980406
Target:  5'- aCGAGGGGacCCGGGGccacuacauccgCGcCGAguACGACg -3'
miRNA:   3'- -GCUUCCU--GGCCCCua----------GCaGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 149742 0.66 0.983141
Target:  5'- aGGAGGACgacgaGGGGGaCGaccccgCGAugGACc -3'
miRNA:   3'- gCUUCCUGg----CCCCUaGCa-----GCUugCUG- -5'
9117 5' -55 NC_002512.2 + 161500 0.66 0.983141
Target:  5'- aGGAGGACCuGGuGcgCugcgCGGACGGCa -3'
miRNA:   3'- gCUUCCUGGcCC-CuaGca--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 91802 0.68 0.939519
Target:  5'- uGGAGGACuCGGuGGGUCGUUccugcaGGACcuGACg -3'
miRNA:   3'- gCUUCCUG-GCC-CCUAGCAG------CUUG--CUG- -5'
9117 5' -55 NC_002512.2 + 123557 0.68 0.948177
Target:  5'- aCGAGcGACCGGGGAgagcCGcCGAA-GGCg -3'
miRNA:   3'- -GCUUcCUGGCCCCUa---GCaGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 224087 0.68 0.955972
Target:  5'- aCGGAGGACCucagGGGGAccgUGUCGGucguggUGACc -3'
miRNA:   3'- -GCUUCCUGG----CCCCUa--GCAGCUu-----GCUG- -5'
9117 5' -55 NC_002512.2 + 93756 0.67 0.962928
Target:  5'- aCGGAGGGCUcggagggagggaGGGaGGUCGggagcggaUCGggUGACg -3'
miRNA:   3'- -GCUUCCUGG------------CCC-CUAGC--------AGCuuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.