miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 3' -53.9 NC_002512.2 + 99641 0.72 0.793878
Target:  5'- uCGGAGGGCCcGgcGCCCgagccgaUCCCcgGCAGCu -3'
miRNA:   3'- -GCUUCUUGGaCuuCGGG-------AGGG--UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 135293 0.72 0.794772
Target:  5'- uGAAGGGCCUGguGUUC-CCCAuCGGCa -3'
miRNA:   3'- gCUUCUUGGACuuCGGGaGGGU-GUCG- -5'
9121 3' -53.9 NC_002512.2 + 104169 0.72 0.812336
Target:  5'- gGAAGGcgcgcgucuACCUGGAGCCCUUUCAgCGGa -3'
miRNA:   3'- gCUUCU---------UGGACUUCGGGAGGGU-GUCg -5'
9121 3' -53.9 NC_002512.2 + 2957 0.72 0.812336
Target:  5'- uGgcGAGCUUGAGcGCCUUCUCGCGGg -3'
miRNA:   3'- gCuuCUUGGACUU-CGGGAGGGUGUCg -5'
9121 3' -53.9 NC_002512.2 + 86795 0.72 0.812336
Target:  5'- gGGAGAgcGCCUGGAGCCggUgUACGGCu -3'
miRNA:   3'- gCUUCU--UGGACUUCGGgaGgGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 37686 0.72 0.820883
Target:  5'- cCGAAGggUCc-GGGUCCUCCC-CAGCc -3'
miRNA:   3'- -GCUUCuuGGacUUCGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 143704 0.72 0.820883
Target:  5'- aCGGAGGGCCgaccuCCagCUCCCGCAGCa -3'
miRNA:   3'- -GCUUCUUGGacuucGG--GAGGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 95539 0.72 0.820883
Target:  5'- aCGGugcGggUCUGGAGCUCggCCGCGGCg -3'
miRNA:   3'- -GCUu--CuuGGACUUCGGGagGGUGUCG- -5'
9121 3' -53.9 NC_002512.2 + 217756 0.72 0.828431
Target:  5'- aGAAGAACCccGGGCCCgUCCCcgucgccggggucGCGGCc -3'
miRNA:   3'- gCUUCUUGGacUUCGGG-AGGG-------------UGUCG- -5'
9121 3' -53.9 NC_002512.2 + 211787 0.72 0.829262
Target:  5'- cCGGGuGGCCgcgGggGCCgUCCCGCcGCg -3'
miRNA:   3'- -GCUUcUUGGa--CuuCGGgAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 24517 0.72 0.829262
Target:  5'- ---uGGGCCUGAccGCCUUCCCGguCAGCg -3'
miRNA:   3'- gcuuCUUGGACUu-CGGGAGGGU--GUCG- -5'
9121 3' -53.9 NC_002512.2 + 207523 0.71 0.837466
Target:  5'- aCGAGGAcgggGCCgc--GUCCUCCCGCuGCg -3'
miRNA:   3'- -GCUUCU----UGGacuuCGGGAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 111379 0.71 0.837466
Target:  5'- uCGAGGAagACCUcGuAGCCgUCCCGCcccGGCa -3'
miRNA:   3'- -GCUUCU--UGGA-CuUCGGgAGGGUG---UCG- -5'
9121 3' -53.9 NC_002512.2 + 81444 0.71 0.837466
Target:  5'- gCGggGGGCCcGGcccccGUCCUCCCcCGGCg -3'
miRNA:   3'- -GCuuCUUGGaCUu----CGGGAGGGuGUCG- -5'
9121 3' -53.9 NC_002512.2 + 82200 0.71 0.845488
Target:  5'- cCGucGGGCC-GgcGUCCUCCCGgGGCg -3'
miRNA:   3'- -GCuuCUUGGaCuuCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 119314 0.71 0.845488
Target:  5'- aGGAGAuCCUGAcccGGCaggaCCUCCCGC-GCg -3'
miRNA:   3'- gCUUCUuGGACU---UCG----GGAGGGUGuCG- -5'
9121 3' -53.9 NC_002512.2 + 74592 0.71 0.853322
Target:  5'- uCGAG--GCC-GggGCCCUCCguCGGCu -3'
miRNA:   3'- -GCUUcuUGGaCuuCGGGAGGguGUCG- -5'
9121 3' -53.9 NC_002512.2 + 35326 0.71 0.853322
Target:  5'- uGAGGGGCac--GGCCUUCCCGgGGCg -3'
miRNA:   3'- gCUUCUUGgacuUCGGGAGGGUgUCG- -5'
9121 3' -53.9 NC_002512.2 + 5362 0.71 0.853322
Target:  5'- --cGGGACCUGuGGUCCUCCgGCucuGGCg -3'
miRNA:   3'- gcuUCUUGGACuUCGGGAGGgUG---UCG- -5'
9121 3' -53.9 NC_002512.2 + 80498 0.71 0.853322
Target:  5'- uCGAGGAGCC-GGAGUCCUgcgucCCCGC-GCc -3'
miRNA:   3'- -GCUUCUUGGaCUUCGGGA-----GGGUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.