miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 3' -63 NC_002512.2 + 229679 0.68 0.589926
Target:  5'- cGGUCCCcGCucccucuccgcccgGGCCCcuucUCGCcCCCGUCc -3'
miRNA:   3'- -CCAGGGcCG--------------UCGGG----AGCGuGGGCAGc -5'
9122 3' -63 NC_002512.2 + 228815 0.66 0.732363
Target:  5'- gGGgagaCCGGCcGCCggUGCugCCGUCu -3'
miRNA:   3'- -CCag--GGCCGuCGGgaGCGugGGCAGc -5'
9122 3' -63 NC_002512.2 + 226511 0.7 0.492408
Target:  5'- gGGUCCUgcuGGCGGCCCU-GC-CgCCGUCc -3'
miRNA:   3'- -CCAGGG---CCGUCGGGAgCGuG-GGCAGc -5'
9122 3' -63 NC_002512.2 + 225148 0.67 0.658469
Target:  5'- --gCCaCaGCAGCCgUCGCAgUCGUCGg -3'
miRNA:   3'- ccaGG-GcCGUCGGgAGCGUgGGCAGC- -5'
9122 3' -63 NC_002512.2 + 225079 0.66 0.750244
Target:  5'- cGUCCCGcaGCAGCUgcCGCAgcaaCCGUCGc -3'
miRNA:   3'- cCAGGGC--CGUCGGgaGCGUg---GGCAGC- -5'
9122 3' -63 NC_002512.2 + 224887 0.67 0.695776
Target:  5'- -cUCgCCGGCcGCCUUCG-ACCCGUUc -3'
miRNA:   3'- ccAG-GGCCGuCGGGAGCgUGGGCAGc -5'
9122 3' -63 NC_002512.2 + 224631 0.67 0.667839
Target:  5'- gGGUCgCCGccGCGGCCUcggccuaCGCGCCCGaguUCGa -3'
miRNA:   3'- -CCAG-GGC--CGUCGGGa------GCGUGGGC---AGC- -5'
9122 3' -63 NC_002512.2 + 223545 0.72 0.416498
Target:  5'- cGG-CCC-GCGGCCC-CGCGCCCGgUCc -3'
miRNA:   3'- -CCaGGGcCGUCGGGaGCGUGGGC-AGc -5'
9122 3' -63 NC_002512.2 + 222608 0.66 0.723308
Target:  5'- cGGccCCCGG-GG-CCUCGCGCCCGaUCc -3'
miRNA:   3'- -CCa-GGGCCgUCgGGAGCGUGGGC-AGc -5'
9122 3' -63 NC_002512.2 + 222570 0.69 0.554648
Target:  5'- cGUCCCGccGCGGCCCgccgUCGCggaggagGCCUGUCc -3'
miRNA:   3'- cCAGGGC--CGUCGGG----AGCG-------UGGGCAGc -5'
9122 3' -63 NC_002512.2 + 222452 0.7 0.474958
Target:  5'- cGGgCCgCGGCcaaccucgcgccGGCCCUCGCGgUCGUCa -3'
miRNA:   3'- -CCaGG-GCCG------------UCGGGAGCGUgGGCAGc -5'
9122 3' -63 NC_002512.2 + 221631 0.66 0.705008
Target:  5'- gGGUccaCCCGGCGGCCCUgcucuacggcgCGaCGCUCGagGc -3'
miRNA:   3'- -CCA---GGGCCGUCGGGA-----------GC-GUGGGCagC- -5'
9122 3' -63 NC_002512.2 + 221565 0.73 0.37004
Target:  5'- cGGUCuCCGGCucccGGCCCU-GC-UCCGUCGa -3'
miRNA:   3'- -CCAG-GGCCG----UCGGGAgCGuGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 220210 0.67 0.667839
Target:  5'- gGGcCCgaCGGCGGCCCgggggacgagUGCGCCCGcCu -3'
miRNA:   3'- -CCaGG--GCCGUCGGGa---------GCGUGGGCaGc -5'
9122 3' -63 NC_002512.2 + 219592 0.72 0.408509
Target:  5'- cGUCCUGGUGGCCgaCUCGCuGCCCGgcuucUCGg -3'
miRNA:   3'- cCAGGGCCGUCGG--GAGCG-UGGGC-----AGC- -5'
9122 3' -63 NC_002512.2 + 218298 0.7 0.492408
Target:  5'- gGGUCCCcggcccugGGCGGCCgCUCGUgcucCCCGUa- -3'
miRNA:   3'- -CCAGGG--------CCGUCGG-GAGCGu---GGGCAgc -5'
9122 3' -63 NC_002512.2 + 215683 0.67 0.692998
Target:  5'- cGUCaCCGGCuGCCCUucugguucggggacCGCAuCCCGcUCu -3'
miRNA:   3'- cCAG-GGCCGuCGGGA--------------GCGU-GGGC-AGc -5'
9122 3' -63 NC_002512.2 + 209750 0.66 0.750244
Target:  5'- cGGUa-CGGaCAGCCgUCGCGCuCCG-CGu -3'
miRNA:   3'- -CCAggGCC-GUCGGgAGCGUG-GGCaGC- -5'
9122 3' -63 NC_002512.2 + 208636 0.68 0.602094
Target:  5'- -cUCCCGcucCAGCCCUcucCGCcCCCGUCu -3'
miRNA:   3'- ccAGGGCc--GUCGGGA---GCGuGGGCAGc -5'
9122 3' -63 NC_002512.2 + 208043 0.67 0.695776
Target:  5'- uGG-CCCGGguGguuuucuccaCUCUCGCgcuuucucggGCCCGUCGc -3'
miRNA:   3'- -CCaGGGCCguC----------GGGAGCG----------UGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.