miRNA display CGI


Results 1 - 20 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 3' -63 NC_002512.2 + 191834 0.66 0.759057
Target:  5'- gGGUCCUuGC-GCCCUCcCACCCcUCc -3'
miRNA:   3'- -CCAGGGcCGuCGGGAGcGUGGGcAGc -5'
9122 3' -63 NC_002512.2 + 192160 0.66 0.723308
Target:  5'- -aUCCCgcGGCcccuGCCCUCGCuguCCGUCc -3'
miRNA:   3'- ccAGGG--CCGu---CGGGAGCGug-GGCAGc -5'
9122 3' -63 NC_002512.2 + 102261 0.66 0.723308
Target:  5'- gGGUCCgGGCgucguccaucucGGCUCg-GCGCgCGUCGa -3'
miRNA:   3'- -CCAGGgCCG------------UCGGGagCGUGgGCAGC- -5'
9122 3' -63 NC_002512.2 + 105113 1.09 0.001291
Target:  5'- gGGUCCCGGCAGCCCUCGCACCCGUCGu -3'
miRNA:   3'- -CCAGGGCCGUCGGGAGCGUGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 103658 0.66 0.759057
Target:  5'- -cUCCuCGGCGGCCacgaGCGCCucgaCGUCGc -3'
miRNA:   3'- ccAGG-GCCGUCGGgag-CGUGG----GCAGC- -5'
9122 3' -63 NC_002512.2 + 225079 0.66 0.750244
Target:  5'- cGUCCCGcaGCAGCUgcCGCAgcaaCCGUCGc -3'
miRNA:   3'- cCAGGGC--CGUCGGgaGCGUg---GGCAGC- -5'
9122 3' -63 NC_002512.2 + 144695 0.66 0.750244
Target:  5'- --aCCCGGCGaCCCacgGgACCCGUCGc -3'
miRNA:   3'- ccaGGGCCGUcGGGag-CgUGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 209750 0.66 0.750244
Target:  5'- cGGUa-CGGaCAGCCgUCGCGCuCCG-CGu -3'
miRNA:   3'- -CCAggGCC-GUCGGgAGCGUG-GGCaGC- -5'
9122 3' -63 NC_002512.2 + 145736 0.66 0.741343
Target:  5'- -cUCCCGcGCGGCCa-CGCGCUC-UCGg -3'
miRNA:   3'- ccAGGGC-CGUCGGgaGCGUGGGcAGC- -5'
9122 3' -63 NC_002512.2 + 222608 0.66 0.723308
Target:  5'- cGGccCCCGG-GG-CCUCGCGCCCGaUCc -3'
miRNA:   3'- -CCa-GGGCCgUCgGGAGCGUGGGC-AGc -5'
9122 3' -63 NC_002512.2 + 149166 0.66 0.741343
Target:  5'- cGGUgCCGcccGCgGGCCCgCGCGCCC-UCGc -3'
miRNA:   3'- -CCAgGGC---CG-UCGGGaGCGUGGGcAGC- -5'
9122 3' -63 NC_002512.2 + 112922 0.66 0.750244
Target:  5'- gGGgcgUCGGCGGCCCgguggCGCgcgaGCCCG-CGg -3'
miRNA:   3'- -CCag-GGCCGUCGGGa----GCG----UGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 190959 0.66 0.759057
Target:  5'- cGGgcgcccgCCgCGGCGGcCCCUCcgGCGCC-GUCGc -3'
miRNA:   3'- -CCa------GG-GCCGUC-GGGAG--CGUGGgCAGC- -5'
9122 3' -63 NC_002512.2 + 128384 0.66 0.741343
Target:  5'- cGUCgCCGGCGGCggaccccgUCUCGaGCCCGguggCGg -3'
miRNA:   3'- cCAG-GGCCGUCG--------GGAGCgUGGGCa---GC- -5'
9122 3' -63 NC_002512.2 + 144317 0.66 0.759057
Target:  5'- -cUCCCGGCcGCUCcCGCuCCCG-CGc -3'
miRNA:   3'- ccAGGGCCGuCGGGaGCGuGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 139994 0.66 0.750244
Target:  5'- cGUCCCaGaCAucuGCCCUCGaCAucCCCGUCc -3'
miRNA:   3'- cCAGGGcC-GU---CGGGAGC-GU--GGGCAGc -5'
9122 3' -63 NC_002512.2 + 228815 0.66 0.732363
Target:  5'- gGGgagaCCGGCcGCCggUGCugCCGUCu -3'
miRNA:   3'- -CCag--GGCCGuCGGgaGCGugGGCAGc -5'
9122 3' -63 NC_002512.2 + 111403 0.66 0.723308
Target:  5'- cGcCCCGGCAGCUCggcgcCGUACUCGa-- -3'
miRNA:   3'- cCaGGGCCGUCGGGa----GCGUGGGCagc -5'
9122 3' -63 NC_002512.2 + 143577 0.66 0.759057
Target:  5'- cGGg-CCGGCGgagagggaggcGCCCUUGCGugcgggccCCCGUCu -3'
miRNA:   3'- -CCagGGCCGU-----------CGGGAGCGU--------GGGCAGc -5'
9122 3' -63 NC_002512.2 + 181660 0.66 0.750244
Target:  5'- cGUCCCGGUAcagguagucgcGCCC-CGCGgCCGg-- -3'
miRNA:   3'- cCAGGGCCGU-----------CGGGaGCGUgGGCagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.