miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 5' -53.6 NC_002512.2 + 206150 0.66 0.994878
Target:  5'- gCCaGACGGucaugGCCGUGUGGAaccgcgucucgUCcUGGg -3'
miRNA:   3'- gGG-CUGCCug---CGGCACAUCU-----------AGaACC- -5'
9122 5' -53.6 NC_002512.2 + 195924 0.66 0.994878
Target:  5'- aCCUGAacUGGucCGCCGUGUGGGcCaacUGGa -3'
miRNA:   3'- -GGGCU--GCCu-GCGGCACAUCUaGa--ACC- -5'
9122 5' -53.6 NC_002512.2 + 217586 0.66 0.994878
Target:  5'- gUCCGGCGG-CGCCGccucggGGGUCgucGGc -3'
miRNA:   3'- -GGGCUGCCuGCGGCaca---UCUAGaa-CC- -5'
9122 5' -53.6 NC_002512.2 + 104772 0.66 0.994878
Target:  5'- uCCCGGuCGGACGgCgCGUGgcgGGGUCc--- -3'
miRNA:   3'- -GGGCU-GCCUGC-G-GCACa--UCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 17513 0.66 0.994878
Target:  5'- uCUCGACGucGGCGUCGgcGUAGGcggccagcucgcUCUUGGa -3'
miRNA:   3'- -GGGCUGC--CUGCGGCa-CAUCU------------AGAACC- -5'
9122 5' -53.6 NC_002512.2 + 192896 0.66 0.994109
Target:  5'- uCgCGAcCGGAUGCCGUGUcauGGAcuUCUUc- -3'
miRNA:   3'- -GgGCU-GCCUGCGGCACA---UCU--AGAAcc -5'
9122 5' -53.6 NC_002512.2 + 60864 0.66 0.994109
Target:  5'- gCCGcucGCGGACGCCGcccGGAUCg--- -3'
miRNA:   3'- gGGC---UGCCUGCGGCacaUCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 174707 0.66 0.994109
Target:  5'- gCCgCG-UGGAUGCCGU--AGGUCaUGGg -3'
miRNA:   3'- -GG-GCuGCCUGCGGCAcaUCUAGaACC- -5'
9122 5' -53.6 NC_002512.2 + 27971 0.66 0.993251
Target:  5'- gCCGAUGGGCGgCCGggcgAGAUUccGGc -3'
miRNA:   3'- gGGCUGCCUGC-GGCaca-UCUAGaaCC- -5'
9122 5' -53.6 NC_002512.2 + 111110 0.66 0.993251
Target:  5'- gCCCGGCGGcggagGCGCCGcccgcgGGGUcCUUGu -3'
miRNA:   3'- -GGGCUGCC-----UGCGGCaca---UCUA-GAACc -5'
9122 5' -53.6 NC_002512.2 + 32565 0.66 0.993251
Target:  5'- gCCGcCGGGCGCCGcggGUgccgGGGUCgugucGGa -3'
miRNA:   3'- gGGCuGCCUGCGGCa--CA----UCUAGaa---CC- -5'
9122 5' -53.6 NC_002512.2 + 54500 0.66 0.993251
Target:  5'- gCCUGGuCGGAgGCCGUGaugccGAUCgaaccgGGa -3'
miRNA:   3'- -GGGCU-GCCUgCGGCACau---CUAGaa----CC- -5'
9122 5' -53.6 NC_002512.2 + 118688 0.66 0.993251
Target:  5'- uCCCGACGucGGCGCCGUGgg---CUUc- -3'
miRNA:   3'- -GGGCUGC--CUGCGGCACaucuaGAAcc -5'
9122 5' -53.6 NC_002512.2 + 176977 0.66 0.993251
Target:  5'- gUCCGACGuACGCCuUGUAGGcguccauguacuUCgUGGg -3'
miRNA:   3'- -GGGCUGCcUGCGGcACAUCU------------AGaACC- -5'
9122 5' -53.6 NC_002512.2 + 143342 0.66 0.993251
Target:  5'- -aCGuCGGACGCCGgaccagGGGUCagaUGGg -3'
miRNA:   3'- ggGCuGCCUGCGGCaca---UCUAGa--ACC- -5'
9122 5' -53.6 NC_002512.2 + 215591 0.66 0.993251
Target:  5'- aCCCGugGGaggacaGCGUCGUccGGGUCUgcGGc -3'
miRNA:   3'- -GGGCugCC------UGCGGCAcaUCUAGAa-CC- -5'
9122 5' -53.6 NC_002512.2 + 127577 0.66 0.993159
Target:  5'- gCCCGACGGAccguccgcgacguCGCCcUGgcGGUCg--- -3'
miRNA:   3'- -GGGCUGCCU-------------GCGGcACauCUAGaacc -5'
9122 5' -53.6 NC_002512.2 + 134388 0.66 0.992295
Target:  5'- gUCCG--GGACGUCGUGUGGAUgCggcGGc -3'
miRNA:   3'- -GGGCugCCUGCGGCACAUCUA-Gaa-CC- -5'
9122 5' -53.6 NC_002512.2 + 94866 0.66 0.992295
Target:  5'- cCCCGAUccuGGCGUCGUGUAGgAUgUcGGu -3'
miRNA:   3'- -GGGCUGc--CUGCGGCACAUC-UAgAaCC- -5'
9122 5' -53.6 NC_002512.2 + 139399 0.66 0.992295
Target:  5'- cCCCGAUcccgucgaGGACGCCccgGU-GAUCggGGa -3'
miRNA:   3'- -GGGCUG--------CCUGCGGca-CAuCUAGaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.