Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9122 | 5' | -53.6 | NC_002512.2 | + | 206150 | 0.66 | 0.994878 |
Target: 5'- gCCaGACGGucaugGCCGUGUGGAaccgcgucucgUCcUGGg -3' miRNA: 3'- gGG-CUGCCug---CGGCACAUCU-----------AGaACC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 195924 | 0.66 | 0.994878 |
Target: 5'- aCCUGAacUGGucCGCCGUGUGGGcCaacUGGa -3' miRNA: 3'- -GGGCU--GCCu-GCGGCACAUCUaGa--ACC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 217586 | 0.66 | 0.994878 |
Target: 5'- gUCCGGCGG-CGCCGccucggGGGUCgucGGc -3' miRNA: 3'- -GGGCUGCCuGCGGCaca---UCUAGaa-CC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 104772 | 0.66 | 0.994878 |
Target: 5'- uCCCGGuCGGACGgCgCGUGgcgGGGUCc--- -3' miRNA: 3'- -GGGCU-GCCUGC-G-GCACa--UCUAGaacc -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 17513 | 0.66 | 0.994878 |
Target: 5'- uCUCGACGucGGCGUCGgcGUAGGcggccagcucgcUCUUGGa -3' miRNA: 3'- -GGGCUGC--CUGCGGCa-CAUCU------------AGAACC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 192896 | 0.66 | 0.994109 |
Target: 5'- uCgCGAcCGGAUGCCGUGUcauGGAcuUCUUc- -3' miRNA: 3'- -GgGCU-GCCUGCGGCACA---UCU--AGAAcc -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 60864 | 0.66 | 0.994109 |
Target: 5'- gCCGcucGCGGACGCCGcccGGAUCg--- -3' miRNA: 3'- gGGC---UGCCUGCGGCacaUCUAGaacc -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 174707 | 0.66 | 0.994109 |
Target: 5'- gCCgCG-UGGAUGCCGU--AGGUCaUGGg -3' miRNA: 3'- -GG-GCuGCCUGCGGCAcaUCUAGaACC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 27971 | 0.66 | 0.993251 |
Target: 5'- gCCGAUGGGCGgCCGggcgAGAUUccGGc -3' miRNA: 3'- gGGCUGCCUGC-GGCaca-UCUAGaaCC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 118688 | 0.66 | 0.993251 |
Target: 5'- uCCCGACGucGGCGCCGUGgg---CUUc- -3' miRNA: 3'- -GGGCUGC--CUGCGGCACaucuaGAAcc -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 54500 | 0.66 | 0.993251 |
Target: 5'- gCCUGGuCGGAgGCCGUGaugccGAUCgaaccgGGa -3' miRNA: 3'- -GGGCU-GCCUgCGGCACau---CUAGaa----CC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 32565 | 0.66 | 0.993251 |
Target: 5'- gCCGcCGGGCGCCGcggGUgccgGGGUCgugucGGa -3' miRNA: 3'- gGGCuGCCUGCGGCa--CA----UCUAGaa---CC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 215591 | 0.66 | 0.993251 |
Target: 5'- aCCCGugGGaggacaGCGUCGUccGGGUCUgcGGc -3' miRNA: 3'- -GGGCugCC------UGCGGCAcaUCUAGAa-CC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 143342 | 0.66 | 0.993251 |
Target: 5'- -aCGuCGGACGCCGgaccagGGGUCagaUGGg -3' miRNA: 3'- ggGCuGCCUGCGGCaca---UCUAGa--ACC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 176977 | 0.66 | 0.993251 |
Target: 5'- gUCCGACGuACGCCuUGUAGGcguccauguacuUCgUGGg -3' miRNA: 3'- -GGGCUGCcUGCGGcACAUCU------------AGaACC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 111110 | 0.66 | 0.993251 |
Target: 5'- gCCCGGCGGcggagGCGCCGcccgcgGGGUcCUUGu -3' miRNA: 3'- -GGGCUGCC-----UGCGGCaca---UCUA-GAACc -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 127577 | 0.66 | 0.993159 |
Target: 5'- gCCCGACGGAccguccgcgacguCGCCcUGgcGGUCg--- -3' miRNA: 3'- -GGGCUGCCU-------------GCGGcACauCUAGaacc -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 139399 | 0.66 | 0.992295 |
Target: 5'- cCCCGAUcccgucgaGGACGCCccgGU-GAUCggGGa -3' miRNA: 3'- -GGGCUG--------CCUGCGGca-CAuCUAGaaCC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 94866 | 0.66 | 0.992295 |
Target: 5'- cCCCGAUccuGGCGUCGUGUAGgAUgUcGGu -3' miRNA: 3'- -GGGCUGc--CUGCGGCACAUC-UAgAaCC- -5' |
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9122 | 5' | -53.6 | NC_002512.2 | + | 134388 | 0.66 | 0.992295 |
Target: 5'- gUCCG--GGACGUCGUGUGGAUgCggcGGc -3' miRNA: 3'- -GGGCugCCUGCGGCACAUCUA-Gaa-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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