miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 5' -60.1 NC_002512.2 + 226505 0.66 0.862145
Target:  5'- cGCCGCG-GGUCCugCugGcGGCccugccgccguccUCGa -3'
miRNA:   3'- cCGGCGCaUCAGGugGugC-CCG-------------AGCa -5'
9126 5' -60.1 NC_002512.2 + 226361 0.67 0.774611
Target:  5'- gGGCUuCGgg--CC-CCGCGGGCUCGg -3'
miRNA:   3'- -CCGGcGCaucaGGuGGUGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 225812 0.68 0.738651
Target:  5'- cGGCCGgGUGG-CCugggaccucgaGCCGCGGGggaUCGa -3'
miRNA:   3'- -CCGGCgCAUCaGG-----------UGGUGCCCg--AGCa -5'
9126 5' -60.1 NC_002512.2 + 223626 0.67 0.800427
Target:  5'- uGUCGC-UGGUgCUGCUcgGCGGGCUCGUc -3'
miRNA:   3'- cCGGCGcAUCA-GGUGG--UGCCCGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 223552 0.69 0.710792
Target:  5'- cGGCCccGCGcccGGUCCccCCGCGGGCggCGg -3'
miRNA:   3'- -CCGG--CGCa--UCAGGu-GGUGCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 223368 0.73 0.48426
Target:  5'- cGCCGaucCGgcGUCUAUCACGGGCUCc- -3'
miRNA:   3'- cCGGC---GCauCAGGUGGUGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 222526 0.66 0.862859
Target:  5'- cGCCGCGg---CCGCCGucgcggugggcCGGGCUaCGg -3'
miRNA:   3'- cCGGCGCaucaGGUGGU-----------GCCCGA-GCa -5'
9126 5' -60.1 NC_002512.2 + 222369 0.66 0.862859
Target:  5'- gGGCCGCcu--UCCcCgGCGGGCUCu- -3'
miRNA:   3'- -CCGGCGcaucAGGuGgUGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 222234 0.71 0.54852
Target:  5'- gGGCCGCGUccuucgUCGCCgugGCGGGuCUCGUg -3'
miRNA:   3'- -CCGGCGCAuca---GGUGG---UGCCC-GAGCA- -5'
9126 5' -60.1 NC_002512.2 + 220768 0.66 0.847493
Target:  5'- aGGCCGaCGUcgGGUCCAUggaccugCugGGGaUCGUc -3'
miRNA:   3'- -CCGGC-GCA--UCAGGUG-------GugCCCgAGCA- -5'
9126 5' -60.1 NC_002512.2 + 220364 0.66 0.862145
Target:  5'- uGGCCGUGgccgCCGCCGCcgugcugGGGC-CGg -3'
miRNA:   3'- -CCGGCGCaucaGGUGGUG-------CCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 220134 0.67 0.816976
Target:  5'- gGGCgGCGgguccGGcUCCGCCGCccccaaGGGCgUCGUg -3'
miRNA:   3'- -CCGgCGCa----UC-AGGUGGUG------CCCG-AGCA- -5'
9126 5' -60.1 NC_002512.2 + 219050 0.77 0.297713
Target:  5'- cGGCCGCGgcgcggGGcUCC-CCGCGGGCUuCGa -3'
miRNA:   3'- -CCGGCGCa-----UC-AGGuGGUGCCCGA-GCa -5'
9126 5' -60.1 NC_002512.2 + 218222 0.66 0.862859
Target:  5'- gGGCCGCGgcGg--GCCGCGGcGC-CGa -3'
miRNA:   3'- -CCGGCGCauCaggUGGUGCC-CGaGCa -5'
9126 5' -60.1 NC_002512.2 + 213613 0.7 0.604635
Target:  5'- cGUCGCGUccGGUCCcugacucuuggccGCCGCGGGCgacggCGa -3'
miRNA:   3'- cCGGCGCA--UCAGG-------------UGGUGCCCGa----GCa -5'
9126 5' -60.1 NC_002512.2 + 211792 0.69 0.710792
Target:  5'- uGGCCGCGgGGgccgucCCGCCGCGGcGCa--- -3'
miRNA:   3'- -CCGGCGCaUCa-----GGUGGUGCC-CGagca -5'
9126 5' -60.1 NC_002512.2 + 207659 0.66 0.840671
Target:  5'- cGGCCGUgGUGG-CguCC-CGGGCUCu- -3'
miRNA:   3'- -CCGGCG-CAUCaGguGGuGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 206162 0.68 0.747783
Target:  5'- uGGCCGUGUGGaaccgcgucUCguCCugGGGCaCGg -3'
miRNA:   3'- -CCGGCGCAUC---------AGguGGugCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 205034 0.72 0.539153
Target:  5'- gGGCCGCGUccgCCgccgaccgGCCGCGGGCcCGg -3'
miRNA:   3'- -CCGGCGCAucaGG--------UGGUGCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 203317 0.66 0.862859
Target:  5'- cGUCGCGUAGUagGCCA-GGGCcgCGa -3'
miRNA:   3'- cCGGCGCAUCAggUGGUgCCCGa-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.