miRNA display CGI


Results 21 - 40 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 227894 0.67 0.98826
Target:  5'- aCGCGggcgaguccgaggcCGGAGACGGAcgcgccgccuccGACGccgGCGGACGa -3'
miRNA:   3'- -GCGCa-------------GCUUCUGCUU------------CUGC---UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 227688 0.7 0.938006
Target:  5'- gGCGaCcGAGACGAcGACGGCGG-CGg -3'
miRNA:   3'- gCGCaGcUUCUGCUuCUGCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 227625 0.72 0.887154
Target:  5'- gGCGgCGgcGGCGAggucAGGCGACGGAgCGc -3'
miRNA:   3'- gCGCaGCuuCUGCU----UCUGCUGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 227509 0.73 0.858963
Target:  5'- cCGCGaccCGggGGgGAGaguccGGCGGCGGACGg -3'
miRNA:   3'- -GCGCa--GCuuCUgCUU-----CUGCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 227323 0.7 0.954451
Target:  5'- aCGCGcCGGcgcccgaggaaggGGACGGAGA-GACgGGACGg -3'
miRNA:   3'- -GCGCaGCU-------------UCUGCUUCUgCUG-CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 227241 0.67 0.988676
Target:  5'- gCGCGgCGGacgggcgggcaucaGGACGAgcgacaGGACGGCGGAg- -3'
miRNA:   3'- -GCGCaGCU--------------UCUGCU------UCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 227208 0.75 0.775961
Target:  5'- cCGCG-CGcGGACcaGGAGGCGGCGGACc -3'
miRNA:   3'- -GCGCaGCuUCUG--CUUCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 227097 0.71 0.933248
Target:  5'- gGUGgggCGAacgAGGCGgcGACGACGGAg- -3'
miRNA:   3'- gCGCa--GCU---UCUGCuuCUGCUGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 226768 0.78 0.601828
Target:  5'- aCGCG--GAGGGCGAGGACGucuCGGGCGa -3'
miRNA:   3'- -GCGCagCUUCUGCUUCUGCu--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 226710 0.8 0.533514
Target:  5'- gGCGUCGAGcGACgGGAGGCcGCGGGCGa -3'
miRNA:   3'- gCGCAGCUU-CUG-CUUCUGcUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 226707 0.67 0.986787
Target:  5'- aCGaCGUCGAcgcgaaacgaguagAGAcagcgaggcuguccCGGAGACGGCGGAgGc -3'
miRNA:   3'- -GC-GCAGCU--------------UCU--------------GCUUCUGCUGCCUgC- -5'
9131 5' -53.1 NC_002512.2 + 226596 0.67 0.98754
Target:  5'- gCGCGgccCGggGGaggaGggGACGGCGacgcagcGACGg -3'
miRNA:   3'- -GCGCa--GCuuCUg---CuuCUGCUGC-------CUGC- -5'
9131 5' -53.1 NC_002512.2 + 226531 0.69 0.965201
Target:  5'- cCGcCGUCcucgaucggagGAAGAgGAAGGCGuCGGACu -3'
miRNA:   3'- -GC-GCAG-----------CUUCUgCUUCUGCuGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 226411 0.67 0.989981
Target:  5'- gGCGgCGAcGAUGGAGAUGGCgagaaaggaugaggGGGCGg -3'
miRNA:   3'- gCGCaGCUuCUGCUUCUGCUG--------------CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 226205 0.68 0.982673
Target:  5'- -cCGUCGggGACGGgaGGACcucCGGACc -3'
miRNA:   3'- gcGCAGCuuCUGCU--UCUGcu-GCCUGc -5'
9131 5' -53.1 NC_002512.2 + 225952 0.67 0.990348
Target:  5'- aCGaCGaCGAcGACGAcGACGACGacGACGa -3'
miRNA:   3'- -GC-GCaGCUuCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 225917 0.81 0.450239
Target:  5'- aCGCGUCGAccgaggGGACGAcGACGACGacGACGa -3'
miRNA:   3'- -GCGCAGCU------UCUGCUuCUGCUGC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 225524 0.67 0.989081
Target:  5'- gGCuUCGcGGACG-GGACGGCGGgagcGCGg -3'
miRNA:   3'- gCGcAGCuUCUGCuUCUGCUGCC----UGC- -5'
9131 5' -53.1 NC_002512.2 + 224799 0.67 0.986159
Target:  5'- cCGCGcCGAcgccGGCGAcGACGaccaacgccGCGGGCGg -3'
miRNA:   3'- -GCGCaGCUu---CUGCUuCUGC---------UGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 224157 0.69 0.973774
Target:  5'- aCGCGUgaGGcgGGGCGggGGCGcGCGGAg- -3'
miRNA:   3'- -GCGCAg-CU--UCUGCuuCUGC-UGCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.