miRNA display CGI


Results 21 - 40 of 571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9131 5' -53.1 NC_002512.2 + 229619 0.66 0.995059
Target:  5'- aGgGagCGggGAcCGAAGGgcaGGCGGGCGg -3'
miRNA:   3'- gCgCa-GCuuCU-GCUUCUg--CUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 156518 0.66 0.995726
Target:  5'- gGCGgCGggGcGCGggGGucCGGCGG-CGg -3'
miRNA:   3'- gCGCaGCuuC-UGCuuCU--GCUGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 223911 0.66 0.996318
Target:  5'- aGCGgCGcGGGCGAgaGGuCGAgcCGGACGg -3'
miRNA:   3'- gCGCaGCuUCUGCU--UCuGCU--GCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 204875 0.66 0.996318
Target:  5'- cCGCGacCGAcGGCGAgcucucGGACGGCGaGCGg -3'
miRNA:   3'- -GCGCa-GCUuCUGCU------UCUGCUGCcUGC- -5'
9131 5' -53.1 NC_002512.2 + 223101 0.66 0.994309
Target:  5'- uGCGUCGAcggGGAgGggGAUccGCGGGuCGa -3'
miRNA:   3'- gCGCAGCU---UCUgCuuCUGc-UGCCU-GC- -5'
9131 5' -53.1 NC_002512.2 + 97079 0.66 0.994843
Target:  5'- uGCGgaucuucuuccggaaGGAcGGCGggGGCGACGGcaaGCGg -3'
miRNA:   3'- gCGCag-------------CUU-CUGCuuCUGCUGCC---UGC- -5'
9131 5' -53.1 NC_002512.2 + 106562 0.66 0.995726
Target:  5'- aGCGgccCGAAGuc---GACGGCGGACa -3'
miRNA:   3'- gCGCa--GCUUCugcuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 207511 0.66 0.996318
Target:  5'- cCGCGacCGAcGACGAGGACGG-GGcCGc -3'
miRNA:   3'- -GCGCa-GCUuCUGCUUCUGCUgCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 133283 0.66 0.995059
Target:  5'- gGCGaUUGAGGGCGAggggaucaucgaAGACGcCGG-CGa -3'
miRNA:   3'- gCGC-AGCUUCUGCU------------UCUGCuGCCuGC- -5'
9131 5' -53.1 NC_002512.2 + 41294 0.66 0.996482
Target:  5'- gGCGUCcuugcggaagGAAGACGGAauuuucguuguccccGAacacgaccggaucCGACGGACGa -3'
miRNA:   3'- gCGCAG----------CUUCUGCUU---------------CU-------------GCUGCCUGC- -5'
9131 5' -53.1 NC_002512.2 + 201343 0.66 0.995726
Target:  5'- aGCGUgGccGACaucgGgcGGCGGCGGACc -3'
miRNA:   3'- gCGCAgCuuCUG----CuuCUGCUGCCUGc -5'
9131 5' -53.1 NC_002512.2 + 103457 0.66 0.995059
Target:  5'- gCGCGggucCGAGGACGcGGcucgggucucgGCGGCGGccGCGg -3'
miRNA:   3'- -GCGCa---GCUUCUGCuUC-----------UGCUGCC--UGC- -5'
9131 5' -53.1 NC_002512.2 + 217898 0.66 0.995726
Target:  5'- cCGCGUCGucGAgCGgcGGuacgaGACGGugGc -3'
miRNA:   3'- -GCGCAGCuuCU-GCuuCUg----CUGCCugC- -5'
9131 5' -53.1 NC_002512.2 + 195616 0.66 0.996318
Target:  5'- gGCGgccaccugcUGGAGACGGgacgGGACGACcGGCGg -3'
miRNA:   3'- gCGCa--------GCUUCUGCU----UCUGCUGcCUGC- -5'
9131 5' -53.1 NC_002512.2 + 77086 0.66 0.996318
Target:  5'- cCGcCGUCGccgcggaccuccGAGACGGAGGCccGGCGGuCa -3'
miRNA:   3'- -GC-GCAGC------------UUCUGCUUCUG--CUGCCuGc -5'
9131 5' -53.1 NC_002512.2 + 157168 0.66 0.996318
Target:  5'- cCGgG-CGgcGugGgcGGCGGCGcGACGa -3'
miRNA:   3'- -GCgCaGCuuCugCuuCUGCUGC-CUGC- -5'
9131 5' -53.1 NC_002512.2 + 76095 0.66 0.994309
Target:  5'- gGCGaUCGGaagcugAGGCGggGGCGcCGGGg- -3'
miRNA:   3'- gCGC-AGCU------UCUGCuuCUGCuGCCUgc -5'
9131 5' -53.1 NC_002512.2 + 219681 0.66 0.994309
Target:  5'- gCGCGccgccCGAGGACGAGGAgGAgCGucGGCGc -3'
miRNA:   3'- -GCGCa----GCUUCUGCUUCUgCU-GC--CUGC- -5'
9131 5' -53.1 NC_002512.2 + 148463 0.66 0.994309
Target:  5'- cCGCGggaCGGAGccGCGAcGGCGGggaGGACGa -3'
miRNA:   3'- -GCGCa--GCUUC--UGCUuCUGCUg--CCUGC- -5'
9131 5' -53.1 NC_002512.2 + 88414 0.66 0.994843
Target:  5'- aCGUugugGUCcAGGGCGAAGACGAaaccgcaggcguccCGGACc -3'
miRNA:   3'- -GCG----CAGcUUCUGCUUCUGCU--------------GCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.