miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 5' -52.3 NC_002512.2 + 79145 0.65 0.996812
Target:  5'- gUCUgGGcCGCGCGCGGGccgacgGGAAGuccaacggucgGCCg -3'
miRNA:   3'- -GGAgUC-GUGUGCGCCU------UCUUCua---------CGG- -5'
9134 5' -52.3 NC_002512.2 + 106779 0.66 0.996604
Target:  5'- cCCgCGGCACugGuCGGGgucggggucgacgucGGGAGGgggcgagGCCg -3'
miRNA:   3'- -GGaGUCGUGugC-GCCU---------------UCUUCUa------CGG- -5'
9134 5' -52.3 NC_002512.2 + 113936 0.66 0.996386
Target:  5'- aCUCGGCcagcgagagcagGC-CGCGGAAGAc-GUGCg -3'
miRNA:   3'- gGAGUCG------------UGuGCGCCUUCUucUACGg -5'
9134 5' -52.3 NC_002512.2 + 50869 0.66 0.996386
Target:  5'- aCCU--GCuACugGCGGGA-AAGGUGCUg -3'
miRNA:   3'- -GGAguCG-UGugCGCCUUcUUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 3808 0.66 0.996386
Target:  5'- cCCgagAGCGagccguCGaCGGAAGAguAGGUGCCg -3'
miRNA:   3'- -GGag-UCGUgu----GC-GCCUUCU--UCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 41180 0.66 0.996386
Target:  5'- uCCUUGGC-CGagGCGGAGG-AGccGCCg -3'
miRNA:   3'- -GGAGUCGuGUg-CGCCUUCuUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 80821 0.66 0.996386
Target:  5'- gCCUCGGCGuCG-GCGGAGGGGccccguaggcGA-GCCu -3'
miRNA:   3'- -GGAGUCGU-GUgCGCCUUCUU----------CUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 194207 0.66 0.996386
Target:  5'- aCCUC-GUcuGgAUGCGGAGGGAcuucGUGCCg -3'
miRNA:   3'- -GGAGuCG--UgUGCGCCUUCUUc---UACGG- -5'
9134 5' -52.3 NC_002512.2 + 216634 0.66 0.996386
Target:  5'- aCCUCguGGUagaACACGCGGAAGucGuc-CCg -3'
miRNA:   3'- -GGAG--UCG---UGUGCGCCUUCuuCuacGG- -5'
9134 5' -52.3 NC_002512.2 + 92350 0.66 0.996386
Target:  5'- aCUCGaacUACACgGUGG-AGAAGGUGCUg -3'
miRNA:   3'- gGAGUc--GUGUG-CGCCuUCUUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 33628 0.66 0.996036
Target:  5'- cCCUCgccgaggcgagaGGCGCGCGCGGGcgcggcGGAcaGGGUcucagaggcucacgcGCCg -3'
miRNA:   3'- -GGAG------------UCGUGUGCGCCU------UCU--UCUA---------------CGG- -5'
9134 5' -52.3 NC_002512.2 + 223912 0.66 0.995788
Target:  5'- --gCGGCGCGgGCGaGAGGucGA-GCCg -3'
miRNA:   3'- ggaGUCGUGUgCGC-CUUCuuCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 193871 0.66 0.995788
Target:  5'- -aUCGGaCGCggcgguggacgACGCGGGAGcGGGUcGCCg -3'
miRNA:   3'- ggAGUC-GUG-----------UGCGCCUUCuUCUA-CGG- -5'
9134 5' -52.3 NC_002512.2 + 222396 0.66 0.995788
Target:  5'- uCCUCauggAGCGC-CGCGGcuucGGcGGggGCCg -3'
miRNA:   3'- -GGAG----UCGUGuGCGCCu---UCuUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 18610 0.66 0.995788
Target:  5'- aCUCGGCGCACucgcaaaaGCGGucGAAcAUGgCg -3'
miRNA:   3'- gGAGUCGUGUG--------CGCCuuCUUcUACgG- -5'
9134 5' -52.3 NC_002512.2 + 173025 0.66 0.995788
Target:  5'- gCUCgcGGUACGCGgaGGggGggGuguacgagGCCa -3'
miRNA:   3'- gGAG--UCGUGUGCg-CCuuCuuCua------CGG- -5'
9134 5' -52.3 NC_002512.2 + 96609 0.66 0.995788
Target:  5'- aCCggAGCGCggagACGCGGggGAGG--GCg -3'
miRNA:   3'- -GGagUCGUG----UGCGCCuuCUUCuaCGg -5'
9134 5' -52.3 NC_002512.2 + 135771 0.66 0.995788
Target:  5'- uCCU-GGCcgacgagagGCugGCGGAGGAgucGGAccgGCCg -3'
miRNA:   3'- -GGAgUCG---------UGugCGCCUUCU---UCUa--CGG- -5'
9134 5' -52.3 NC_002512.2 + 90842 0.66 0.995788
Target:  5'- gUUCAGUccgguaACGgGUGGGAGAAGAagGUCg -3'
miRNA:   3'- gGAGUCG------UGUgCGCCUUCUUCUa-CGG- -5'
9134 5' -52.3 NC_002512.2 + 89082 0.66 0.995788
Target:  5'- ---aGGUACAUgGCGGA-GAAGAgcagGCCg -3'
miRNA:   3'- ggagUCGUGUG-CGCCUuCUUCUa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.