miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9144 5' -55.8 NC_002512.2 + 191517 0.65 0.968893
Target:  5'- uUCCUacgaggaggccgugGGGUCGGgcgacccggcGGAUCCCcGCGaUCCg -3'
miRNA:   3'- uAGGG--------------UCUAGCC----------UCUAGGG-CGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 38449 0.66 0.966803
Target:  5'- -cCCCGGG-CGGAGugaacaugacuGUCCCGCccGggCCg -3'
miRNA:   3'- uaGGGUCUaGCCUC-----------UAGGGCG--CaaGG- -5'
9144 5' -55.8 NC_002512.2 + 38921 0.66 0.966803
Target:  5'- -gCCCGGAggggccgccgCGGcgGGcgCCCGCGUgcgCCc -3'
miRNA:   3'- uaGGGUCUa---------GCC--UCuaGGGCGCAa--GG- -5'
9144 5' -55.8 NC_002512.2 + 8935 0.66 0.966803
Target:  5'- --gCCGGGUCGGcGAUgaagagCGCGUUCCg -3'
miRNA:   3'- uagGGUCUAGCCuCUAgg----GCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 31928 0.66 0.964935
Target:  5'- uAUCUCAGAUUGGuGGUCCgaaauguuuuuauuuCGCGUcaugUCUa -3'
miRNA:   3'- -UAGGGUCUAGCCuCUAGG---------------GCGCA----AGG- -5'
9144 5' -55.8 NC_002512.2 + 156019 0.66 0.96365
Target:  5'- -aCCCAGGUCGuuguguGAUCCCGgGcggUCUu -3'
miRNA:   3'- uaGGGUCUAGCcu----CUAGGGCgCa--AGG- -5'
9144 5' -55.8 NC_002512.2 + 139419 0.66 0.96365
Target:  5'- -cCCCGguGAUCGGGGA-CCCGCa---- -3'
miRNA:   3'- uaGGGU--CUAGCCUCUaGGGCGcaagg -5'
9144 5' -55.8 NC_002512.2 + 126588 0.66 0.96365
Target:  5'- -gCCCGGAUCuGGgacAGGUCCCgGCGgaUCu -3'
miRNA:   3'- uaGGGUCUAG-CC---UCUAGGG-CGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 126994 0.66 0.960293
Target:  5'- cUCCCAGcgCGGgucguacccGGGUCCCcCGUaggcgUCCc -3'
miRNA:   3'- uAGGGUCuaGCC---------UCUAGGGcGCA-----AGG- -5'
9144 5' -55.8 NC_002512.2 + 195560 0.66 0.956728
Target:  5'- cUCCCGGGUCGccGGGUCCCugaaGUGgaCCg -3'
miRNA:   3'- uAGGGUCUAGCc-UCUAGGG----CGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 127822 0.66 0.956728
Target:  5'- gGUCCCGGcUCcgGGAGGUCguCgGCGgcgUCCg -3'
miRNA:   3'- -UAGGGUCuAG--CCUCUAG--GgCGCa--AGG- -5'
9144 5' -55.8 NC_002512.2 + 185652 0.66 0.956728
Target:  5'- cUCCUGGGggacgucgCGGGGAUCCUGaagUCCu -3'
miRNA:   3'- uAGGGUCUa-------GCCUCUAGGGCgcaAGG- -5'
9144 5' -55.8 NC_002512.2 + 137385 0.66 0.956728
Target:  5'- cUCCCGGAagCGGAGGaagUCCGUGUa-- -3'
miRNA:   3'- uAGGGUCUa-GCCUCUa--GGGCGCAagg -5'
9144 5' -55.8 NC_002512.2 + 100487 0.66 0.956728
Target:  5'- -gCCCGGAccUUGGGGAggCCGCGgUCg -3'
miRNA:   3'- uaGGGUCU--AGCCUCUagGGCGCaAGg -5'
9144 5' -55.8 NC_002512.2 + 133324 0.66 0.95295
Target:  5'- uUCCUguAGAUgCGGAGAugcUCCCGCcg-CCc -3'
miRNA:   3'- uAGGG--UCUA-GCCUCU---AGGGCGcaaGG- -5'
9144 5' -55.8 NC_002512.2 + 150510 0.66 0.95295
Target:  5'- -cCCgCGGGUCGGGGugcaguUCCaCGCGgcggCCg -3'
miRNA:   3'- uaGG-GUCUAGCCUCu-----AGG-GCGCaa--GG- -5'
9144 5' -55.8 NC_002512.2 + 76679 0.66 0.95295
Target:  5'- --aCCGGggCGGgacGGGUCCCGgGUgCCg -3'
miRNA:   3'- uagGGUCuaGCC---UCUAGGGCgCAaGG- -5'
9144 5' -55.8 NC_002512.2 + 137835 0.66 0.95295
Target:  5'- cGUUCCAGGgcgucUCGcAGcUCCCGCGUcuUCCc -3'
miRNA:   3'- -UAGGGUCU-----AGCcUCuAGGGCGCA--AGG- -5'
9144 5' -55.8 NC_002512.2 + 192259 0.66 0.95295
Target:  5'- cGUUCgGGucUCGGAGAUCCCacggcaugguguGCGUccgaUCCg -3'
miRNA:   3'- -UAGGgUCu-AGCCUCUAGGG------------CGCA----AGG- -5'
9144 5' -55.8 NC_002512.2 + 25310 0.66 0.95295
Target:  5'- -cCCCAG-UCGGGGucgCCCcaccggaggGCGUUCUu -3'
miRNA:   3'- uaGGGUCuAGCCUCua-GGG---------CGCAAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.