miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 123915 0.66 0.98899
Target:  5'- gAGcGGGAAGGugGACGGcgggcUGGcCGuCAGa -3'
miRNA:   3'- -UC-CCCUUCCugCUGCU-----ACUaGCuGUU- -5'
9154 3' -53.6 NC_002512.2 + 75551 0.66 0.98899
Target:  5'- uGGcGGAGGACGACGAcgcgGA-CGACu- -3'
miRNA:   3'- uCCcCUUCCUGCUGCUa---CUaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 223275 0.66 0.988573
Target:  5'- gGGGGGcGGGACGccgcgcgcagcuacAUGGUGccgccgGUCGACAc -3'
miRNA:   3'- -UCCCCuUCCUGC--------------UGCUAC------UAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 189896 0.66 0.987552
Target:  5'- cGGcGGcGAGGACGGCGgcGAggaCGGCGg -3'
miRNA:   3'- uCC-CC-UUCCUGCUGCuaCUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 157161 0.66 0.987552
Target:  5'- cGGcGGGccGGGCGGCG-UGggCGGCGg -3'
miRNA:   3'- -UC-CCCuuCCUGCUGCuACuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 158846 0.66 0.987552
Target:  5'- cGGGGGAgcGGGGgGACGucgucGUCGACc- -3'
miRNA:   3'- -UCCCCU--UCCUgCUGCuac--UAGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 184126 0.66 0.987552
Target:  5'- cGGGGGcGGGuucgcCGACGAcGAcagCGACGAc -3'
miRNA:   3'- -UCCCCuUCCu----GCUGCUaCUa--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 121793 0.66 0.987552
Target:  5'- cGGGGAcgccgaaGACGACGAcGA-CGACGAc -3'
miRNA:   3'- uCCCCUuc-----CUGCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 225997 0.66 0.985973
Target:  5'- aAGGGGAccGGGACGcCGGUGc-UGACu- -3'
miRNA:   3'- -UCCCCU--UCCUGCuGCUACuaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 223726 0.66 0.985973
Target:  5'- -cGGGGAGGACGAcCGGgagaccGUCGugGAg -3'
miRNA:   3'- ucCCCUUCCUGCU-GCUac----UAGCugUU- -5'
9154 3' -53.6 NC_002512.2 + 20894 0.66 0.985973
Target:  5'- cGGGGGAAGaGGCG-CGAgGAcaggCGAUAAc -3'
miRNA:   3'- -UCCCCUUC-CUGCuGCUaCUa---GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 169338 0.66 0.985973
Target:  5'- uGGGGGccGGACGugGGagggGAcUGGCAu -3'
miRNA:   3'- -UCCCCuuCCUGCugCUa---CUaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 109252 0.66 0.985973
Target:  5'- -cGGGAagAGGugGACGuuucucggacagGUGAUCGugAu -3'
miRNA:   3'- ucCCCU--UCCugCUGC------------UACUAGCugUu -5'
9154 3' -53.6 NC_002512.2 + 228802 0.66 0.984246
Target:  5'- gAGaGGGAGGGACGGgGA-GAcCGGCc- -3'
miRNA:   3'- -UC-CCCUUCCUGCUgCUaCUaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 129294 0.66 0.984246
Target:  5'- gGGGGGAGGGAgcaCGGCGGaggGAaCGGgAAg -3'
miRNA:   3'- -UCCCCUUCCU---GCUGCUa--CUaGCUgUU- -5'
9154 3' -53.6 NC_002512.2 + 145056 0.66 0.984246
Target:  5'- -cGGGAGaucgaccacguGGACG-CGAaGAUCGACGAg -3'
miRNA:   3'- ucCCCUU-----------CCUGCuGCUaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 159545 0.66 0.984246
Target:  5'- cAGaGGAacGGGGCGACGGUGAUCc---- -3'
miRNA:   3'- -UCcCCU--UCCUGCUGCUACUAGcuguu -5'
9154 3' -53.6 NC_002512.2 + 79058 0.66 0.984246
Target:  5'- cGGGGAAGcGCGGCGcgGucgucaCGGCGAc -3'
miRNA:   3'- uCCCCUUCcUGCUGCuaCua----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 227905 0.66 0.984246
Target:  5'- cGGGGAAaauGGAgaaGGCGAUGGaaGACAGc -3'
miRNA:   3'- uCCCCUU---CCUg--CUGCUACUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 126917 0.66 0.983135
Target:  5'- gGGGGGAGgccGGGCuGGCGAUacccgcccgcgccccGGUCGACc- -3'
miRNA:   3'- -UCCCCUU---CCUG-CUGCUA---------------CUAGCUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.