miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9158 5' -48.9 NC_002512.2 + 123108 0.66 0.9999
Target:  5'- gGCGGAACCGUcccgccgcCGUCGGCggccguccCGggGg -3'
miRNA:   3'- gUGCCUUGGCAa-------GUAGCUGa-------GCuuUa -5'
9158 5' -48.9 NC_002512.2 + 155272 0.66 0.9999
Target:  5'- uCGCgGGAGCCGagg--CGGCUCGAGc- -3'
miRNA:   3'- -GUG-CCUUGGCaaguaGCUGAGCUUua -5'
9158 5' -48.9 NC_002512.2 + 99821 0.66 0.9999
Target:  5'- -uCGGGACCGUccagggacgcgUCAUUGACUuuauugaauaCGGAAUa -3'
miRNA:   3'- guGCCUUGGCA-----------AGUAGCUGA----------GCUUUA- -5'
9158 5' -48.9 NC_002512.2 + 153920 0.66 0.9999
Target:  5'- aACGGuuCCGUgCAuUCGAgUCGAGAa -3'
miRNA:   3'- gUGCCuuGGCAaGU-AGCUgAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 184759 0.66 0.99987
Target:  5'- gGCGGGcggcCCGUggUCGUCGACccCGAGGa -3'
miRNA:   3'- gUGCCUu---GGCA--AGUAGCUGa-GCUUUa -5'
9158 5' -48.9 NC_002512.2 + 12584 0.66 0.99987
Target:  5'- gGCGGAGCCGaUCAUcuccCGGCgcgCGGu-- -3'
miRNA:   3'- gUGCCUUGGCaAGUA----GCUGa--GCUuua -5'
9158 5' -48.9 NC_002512.2 + 228990 0.66 0.99987
Target:  5'- aGCGGAACCGUgg--CGGCgggacuagCGGGAg -3'
miRNA:   3'- gUGCCUUGGCAaguaGCUGa-------GCUUUa -5'
9158 5' -48.9 NC_002512.2 + 156267 0.66 0.999833
Target:  5'- uUACGGAACCGgaguugCAgaggCGACUCc---- -3'
miRNA:   3'- -GUGCCUUGGCaa----GUa---GCUGAGcuuua -5'
9158 5' -48.9 NC_002512.2 + 31699 0.66 0.999833
Target:  5'- aCGCGGAcCUGUUCGcCGACgUGGAGg -3'
miRNA:   3'- -GUGCCUuGGCAAGUaGCUGaGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 119349 0.66 0.999788
Target:  5'- gGCGGAaacGCCGgUCAcggCGACUCGc--- -3'
miRNA:   3'- gUGCCU---UGGCaAGUa--GCUGAGCuuua -5'
9158 5' -48.9 NC_002512.2 + 99325 0.66 0.999788
Target:  5'- uCACGGucCUGUaCGUCGuCUCGGAc- -3'
miRNA:   3'- -GUGCCuuGGCAaGUAGCuGAGCUUua -5'
9158 5' -48.9 NC_002512.2 + 131547 0.66 0.999788
Target:  5'- aACGG--CCaGUUCGUCGcGCUCGGGAg -3'
miRNA:   3'- gUGCCuuGG-CAAGUAGC-UGAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 152245 0.66 0.999788
Target:  5'- uGCGGAACgugUCGUCG-CUCGAc-- -3'
miRNA:   3'- gUGCCUUGgcaAGUAGCuGAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 173298 0.66 0.999731
Target:  5'- gCugGaGGGCCG-UCAUCGGCUCc---- -3'
miRNA:   3'- -GugC-CUUGGCaAGUAGCUGAGcuuua -5'
9158 5' -48.9 NC_002512.2 + 217801 0.66 0.999731
Target:  5'- gGCGGAucggcgucGCCGUcccgaUCGUCGACggCGGGc- -3'
miRNA:   3'- gUGCCU--------UGGCA-----AGUAGCUGa-GCUUua -5'
9158 5' -48.9 NC_002512.2 + 124283 0.67 0.999661
Target:  5'- -uCGGAcCCGggCGUgCGGCUCGAc-- -3'
miRNA:   3'- guGCCUuGGCaaGUA-GCUGAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 190627 0.67 0.999576
Target:  5'- -uCGGAACUGUcuucgUCAUCGGCgucgucaCGAGAUu -3'
miRNA:   3'- guGCCUUGGCA-----AGUAGCUGa------GCUUUA- -5'
9158 5' -48.9 NC_002512.2 + 152305 0.67 0.999576
Target:  5'- --aGGGACCGcUCGgcgUGGCUCGGAc- -3'
miRNA:   3'- gugCCUUGGCaAGUa--GCUGAGCUUua -5'
9158 5' -48.9 NC_002512.2 + 121352 0.67 0.999474
Target:  5'- gGCGGGGCCGUUgGaCGGCggaGAGGg -3'
miRNA:   3'- gUGCCUUGGCAAgUaGCUGag-CUUUa -5'
9158 5' -48.9 NC_002512.2 + 77444 0.67 0.99935
Target:  5'- uCACGGAcgACCGagCGUCGAUUCc---- -3'
miRNA:   3'- -GUGCCU--UGGCaaGUAGCUGAGcuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.