miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 220202 0.66 0.991029
Target:  5'- cCCCGccGggGCCcgACGGCGGcccgGGGGACGa -3'
miRNA:   3'- uGGGU--CuuUGG--UGUCGUC----UCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 132123 0.66 0.988453
Target:  5'- cGCCCGGuAGGCCGCgAGCA---AGACGa -3'
miRNA:   3'- -UGGGUC-UUUGGUG-UCGUcucUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 157148 0.66 0.988453
Target:  5'- gGCCCGGGgcgggcggcgGGCCggGCGGCGuGGGcGGCGGc -3'
miRNA:   3'- -UGGGUCU----------UUGG--UGUCGU-CUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 59433 1.1 0.00691
Target:  5'- aACCCAGAAACCACAGCAGAGAGACGGu -3'
miRNA:   3'- -UGGGUCUUUGGUGUCGUCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 58624 0.66 0.991029
Target:  5'- aGCCCAGAuAUgGCAG-AGAGcAGACu- -3'
miRNA:   3'- -UGGGUCUuUGgUGUCgUCUC-UCUGcc -5'
9164 3' -53.4 NC_002512.2 + 212881 0.66 0.991029
Target:  5'- cUCCGGAGACgGCGGCcauGGAccGAGuCGGc -3'
miRNA:   3'- uGGGUCUUUGgUGUCG---UCU--CUCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 148420 0.66 0.991029
Target:  5'- uGCCUccugcGGGACCGcCGGgGGAG-GACGGg -3'
miRNA:   3'- -UGGGu----CUUUGGU-GUCgUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 32927 0.66 0.990912
Target:  5'- uACCUGGAGGCCGucgagcagcaauuCGGCAcaacacgccGGGAGACGu -3'
miRNA:   3'- -UGGGUCUUUGGU-------------GUCGU---------CUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 157362 0.66 0.989804
Target:  5'- cGCCgAGGuccgGGCCGCcgGGCAGGGAccgGACGa -3'
miRNA:   3'- -UGGgUCU----UUGGUG--UCGUCUCU---CUGCc -5'
9164 3' -53.4 NC_002512.2 + 62279 0.66 0.989804
Target:  5'- cCCCGGAucCCGCcuGGCAGccuGGAUGGa -3'
miRNA:   3'- uGGGUCUuuGGUG--UCGUCuc-UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 197893 0.66 0.989804
Target:  5'- gACCCGGuucUCGgGGagGGGGGGACGGg -3'
miRNA:   3'- -UGGGUCuuuGGUgUCg-UCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 98786 0.66 0.990309
Target:  5'- gGCCCGGcgcACCACgucagguaccccggcGGcCGGAGcGACGGa -3'
miRNA:   3'- -UGGGUCuu-UGGUG---------------UC-GUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 205062 0.66 0.991029
Target:  5'- gGCCCGGAc-CUACuGGCuGGAGAGcgGCGGc -3'
miRNA:   3'- -UGGGUCUuuGGUG-UCG-UCUCUC--UGCC- -5'
9164 3' -53.4 NC_002512.2 + 147278 0.66 0.989804
Target:  5'- gACCCGGGAcGCCGCgcgucguucccGGgGGGGAGA-GGa -3'
miRNA:   3'- -UGGGUCUU-UGGUG-----------UCgUCUCUCUgCC- -5'
9164 3' -53.4 NC_002512.2 + 78101 0.66 0.991029
Target:  5'- cGCCCgAGAGACCAaaacccuccCGGGGAGAUGu -3'
miRNA:   3'- -UGGG-UCUUUGGUguc------GUCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 94260 0.66 0.990674
Target:  5'- gACCCGGAcccccGAgaacucgcuggcguCCACGGcCGGGGAG-CGGu -3'
miRNA:   3'- -UGGGUCU-----UU--------------GGUGUC-GUCUCUCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 131132 0.66 0.989804
Target:  5'- -gCCAGGAcCCgAUGGCGGGGcaGGGCGGc -3'
miRNA:   3'- ugGGUCUUuGG-UGUCGUCUC--UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 208576 0.66 0.988453
Target:  5'- gGCCgAGucGACgCGCAGCGGGuccGGGACGa -3'
miRNA:   3'- -UGGgUCu-UUG-GUGUCGUCU---CUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 75537 0.66 0.991029
Target:  5'- cACCCucGAcGCCGUGGCGGAG-GACGa -3'
miRNA:   3'- -UGGGu-CUuUGGUGUCGUCUCuCUGCc -5'
9164 3' -53.4 NC_002512.2 + 204817 0.66 0.991029
Target:  5'- uCCCGGggG-CGCGGCGGcuccguccgggaGGAcGACGGc -3'
miRNA:   3'- uGGGUCuuUgGUGUCGUC------------UCU-CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.