Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9164 | 5' | -63.5 | NC_002512.2 | + | 44651 | 0.66 | 0.675146 |
Target: 5'- -gUCGAGGCUCUCGCCcacgcguuccacgacGCGGGcCa- -3' miRNA: 3'- uaGGCUCCGGGAGCGGu--------------CGCCCaGag -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 219986 | 0.66 | 0.66466 |
Target: 5'- -aCUGcGGGaccucgcuccCCCUCGcCCGGCGGGUCg- -3' miRNA: 3'- uaGGC-UCC----------GGGAGC-GGUCGCCCAGag -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 153966 | 0.66 | 0.66466 |
Target: 5'- cUUCGGGGUCCggcggCGCCGGCGGcGg--- -3' miRNA: 3'- uAGGCUCCGGGa----GCGGUCGCC-Cagag -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 165396 | 0.66 | 0.663705 |
Target: 5'- -gUCGGGGCgCUCaugguccaggaggGCCGGCGGGcCUa -3' miRNA: 3'- uaGGCUCCGgGAG-------------CGGUCGCCCaGAg -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 100430 | 0.66 | 0.655104 |
Target: 5'- cGUCCGAGGgCCUCGCa----GGUCUUc -3' miRNA: 3'- -UAGGCUCCgGGAGCGgucgcCCAGAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 158508 | 0.66 | 0.655104 |
Target: 5'- uUCCGcGGCCUgCGCCAGCGcucccugCUCg -3' miRNA: 3'- uAGGCuCCGGGaGCGGUCGCcca----GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 91992 | 0.66 | 0.655104 |
Target: 5'- cGUCCGGGucuCCCgcgUCGCCGGCGGcGgaCUCg -3' miRNA: 3'- -UAGGCUCc--GGG---AGCGGUCGCC-Ca-GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 225784 | 0.66 | 0.645531 |
Target: 5'- -cCCGAGGCUg-CGCCGGcCGGGcCg- -3' miRNA: 3'- uaGGCUCCGGgaGCGGUC-GCCCaGag -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 207728 | 0.66 | 0.645531 |
Target: 5'- -gCCGA-GUCCaUCGUCGGCGGGggacgCUCc -3' miRNA: 3'- uaGGCUcCGGG-AGCGGUCGCCCa----GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 115858 | 0.66 | 0.63595 |
Target: 5'- -cUCGAGGCgUUCGCCgaGGCGGGcC-Cg -3' miRNA: 3'- uaGGCUCCGgGAGCGG--UCGCCCaGaG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 15682 | 0.66 | 0.63595 |
Target: 5'- -cCCGGGGCagCggGCgCAGCGGGUcCUCc -3' miRNA: 3'- uaGGCUCCGg-GagCG-GUCGCCCA-GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 157698 | 0.66 | 0.63595 |
Target: 5'- uUCCGc-GCCUUCGCCucGGCGGG-CUg -3' miRNA: 3'- uAGGCucCGGGAGCGG--UCGCCCaGAg -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 102367 | 0.66 | 0.63595 |
Target: 5'- cGUCCgGAGGUCCUggaGCCGGacgaGGGgaugCUCc -3' miRNA: 3'- -UAGG-CUCCGGGAg--CGGUCg---CCCa---GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 101761 | 0.66 | 0.626365 |
Target: 5'- -cCCGGGcGCUC-CGUCGGCGGGaaccCUCg -3' miRNA: 3'- uaGGCUC-CGGGaGCGGUCGCCCa---GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 134665 | 0.66 | 0.626365 |
Target: 5'- aGUgCGGGGCCgaCGCgauccgucacCAGCGGGcgCUCg -3' miRNA: 3'- -UAgGCUCCGGgaGCG----------GUCGCCCa-GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 64627 | 0.66 | 0.626365 |
Target: 5'- gGUCCGGGGCuCCgcgacgCGUCcGCGaGGUCg- -3' miRNA: 3'- -UAGGCUCCG-GGa-----GCGGuCGC-CCAGag -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 11142 | 0.67 | 0.616785 |
Target: 5'- aGUCCGAGGgCCggacacgCGCUcGaCGGGUCg- -3' miRNA: 3'- -UAGGCUCCgGGa------GCGGuC-GCCCAGag -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 225218 | 0.67 | 0.616785 |
Target: 5'- cUCCuGGGCUUcgacgCGCCGGCGGGgcCUCc -3' miRNA: 3'- uAGGcUCCGGGa----GCGGUCGCCCa-GAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 123215 | 0.67 | 0.607215 |
Target: 5'- -cCCGAGGaCgUCGCCGcccaguGCGGG-CUCg -3' miRNA: 3'- uaGGCUCCgGgAGCGGU------CGCCCaGAG- -5' |
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9164 | 5' | -63.5 | NC_002512.2 | + | 80046 | 0.67 | 0.607215 |
Target: 5'- -gUCGucGUCCUCGUCGcGCGGGUCg- -3' miRNA: 3'- uaGGCucCGGGAGCGGU-CGCCCAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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