miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 5' -63.5 NC_002512.2 + 44651 0.66 0.675146
Target:  5'- -gUCGAGGCUCUCGCCcacgcguuccacgacGCGGGcCa- -3'
miRNA:   3'- uaGGCUCCGGGAGCGGu--------------CGCCCaGag -5'
9164 5' -63.5 NC_002512.2 + 219986 0.66 0.66466
Target:  5'- -aCUGcGGGaccucgcuccCCCUCGcCCGGCGGGUCg- -3'
miRNA:   3'- uaGGC-UCC----------GGGAGC-GGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 153966 0.66 0.66466
Target:  5'- cUUCGGGGUCCggcggCGCCGGCGGcGg--- -3'
miRNA:   3'- uAGGCUCCGGGa----GCGGUCGCC-Cagag -5'
9164 5' -63.5 NC_002512.2 + 165396 0.66 0.663705
Target:  5'- -gUCGGGGCgCUCaugguccaggaggGCCGGCGGGcCUa -3'
miRNA:   3'- uaGGCUCCGgGAG-------------CGGUCGCCCaGAg -5'
9164 5' -63.5 NC_002512.2 + 100430 0.66 0.655104
Target:  5'- cGUCCGAGGgCCUCGCa----GGUCUUc -3'
miRNA:   3'- -UAGGCUCCgGGAGCGgucgcCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 158508 0.66 0.655104
Target:  5'- uUCCGcGGCCUgCGCCAGCGcucccugCUCg -3'
miRNA:   3'- uAGGCuCCGGGaGCGGUCGCcca----GAG- -5'
9164 5' -63.5 NC_002512.2 + 91992 0.66 0.655104
Target:  5'- cGUCCGGGucuCCCgcgUCGCCGGCGGcGgaCUCg -3'
miRNA:   3'- -UAGGCUCc--GGG---AGCGGUCGCC-Ca-GAG- -5'
9164 5' -63.5 NC_002512.2 + 225784 0.66 0.645531
Target:  5'- -cCCGAGGCUg-CGCCGGcCGGGcCg- -3'
miRNA:   3'- uaGGCUCCGGgaGCGGUC-GCCCaGag -5'
9164 5' -63.5 NC_002512.2 + 207728 0.66 0.645531
Target:  5'- -gCCGA-GUCCaUCGUCGGCGGGggacgCUCc -3'
miRNA:   3'- uaGGCUcCGGG-AGCGGUCGCCCa----GAG- -5'
9164 5' -63.5 NC_002512.2 + 115858 0.66 0.63595
Target:  5'- -cUCGAGGCgUUCGCCgaGGCGGGcC-Cg -3'
miRNA:   3'- uaGGCUCCGgGAGCGG--UCGCCCaGaG- -5'
9164 5' -63.5 NC_002512.2 + 102367 0.66 0.63595
Target:  5'- cGUCCgGAGGUCCUggaGCCGGacgaGGGgaugCUCc -3'
miRNA:   3'- -UAGG-CUCCGGGAg--CGGUCg---CCCa---GAG- -5'
9164 5' -63.5 NC_002512.2 + 15682 0.66 0.63595
Target:  5'- -cCCGGGGCagCggGCgCAGCGGGUcCUCc -3'
miRNA:   3'- uaGGCUCCGg-GagCG-GUCGCCCA-GAG- -5'
9164 5' -63.5 NC_002512.2 + 157698 0.66 0.63595
Target:  5'- uUCCGc-GCCUUCGCCucGGCGGG-CUg -3'
miRNA:   3'- uAGGCucCGGGAGCGG--UCGCCCaGAg -5'
9164 5' -63.5 NC_002512.2 + 64627 0.66 0.626365
Target:  5'- gGUCCGGGGCuCCgcgacgCGUCcGCGaGGUCg- -3'
miRNA:   3'- -UAGGCUCCG-GGa-----GCGGuCGC-CCAGag -5'
9164 5' -63.5 NC_002512.2 + 134665 0.66 0.626365
Target:  5'- aGUgCGGGGCCgaCGCgauccgucacCAGCGGGcgCUCg -3'
miRNA:   3'- -UAgGCUCCGGgaGCG----------GUCGCCCa-GAG- -5'
9164 5' -63.5 NC_002512.2 + 101761 0.66 0.626365
Target:  5'- -cCCGGGcGCUC-CGUCGGCGGGaaccCUCg -3'
miRNA:   3'- uaGGCUC-CGGGaGCGGUCGCCCa---GAG- -5'
9164 5' -63.5 NC_002512.2 + 11142 0.67 0.616785
Target:  5'- aGUCCGAGGgCCggacacgCGCUcGaCGGGUCg- -3'
miRNA:   3'- -UAGGCUCCgGGa------GCGGuC-GCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 225218 0.67 0.616785
Target:  5'- cUCCuGGGCUUcgacgCGCCGGCGGGgcCUCc -3'
miRNA:   3'- uAGGcUCCGGGa----GCGGUCGCCCa-GAG- -5'
9164 5' -63.5 NC_002512.2 + 80046 0.67 0.607215
Target:  5'- -gUCGucGUCCUCGUCGcGCGGGUCg- -3'
miRNA:   3'- uaGGCucCGGGAGCGGU-CGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 123215 0.67 0.607215
Target:  5'- -cCCGAGGaCgUCGCCGcccaguGCGGG-CUCg -3'
miRNA:   3'- uaGGCUCCgGgAGCGGU------CGCCCaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.