miRNA display CGI


Results 1 - 20 of 736 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9186 3' -68.4 NC_002512.2 + 38449 0.66 0.524874
Target:  5'- cCCCGGGCggagUgaacaugacugucccGCCCgGGCCGCCa-CGGCg -3'
miRNA:   3'- -GGGUCCG----G---------------UGGG-CCGGCGGgcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 18409 0.66 0.521382
Target:  5'- gCUGuGCCucgGCCUGGcCCGCgaCGCGGCCc -3'
miRNA:   3'- gGGUcCGG---UGGGCC-GGCGg-GCGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 34334 0.66 0.521382
Target:  5'- aCCC-GGCgACCCGGgaGCUgaGCGGgCg -3'
miRNA:   3'- -GGGuCCGgUGGGCCggCGGg-CGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 27958 0.66 0.521382
Target:  5'- aCCCGGGCC-CgUcGCCGauggGCGGCCg -3'
miRNA:   3'- -GGGUCCGGuGgGcCGGCggg-CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 9756 0.66 0.521382
Target:  5'- -gCGGaGCCggACCC-GCCGCCCcgcgugGCGGCUc -3'
miRNA:   3'- ggGUC-CGG--UGGGcCGGCGGG------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 76504 0.66 0.521382
Target:  5'- cUCCAcGUCGCuCCGGaCCGCCaGCcGCCg -3'
miRNA:   3'- -GGGUcCGGUG-GGCC-GGCGGgCGcCGG- -5'
9186 3' -68.4 NC_002512.2 + 139261 0.66 0.521382
Target:  5'- gCCGGgucgcGCCGCCCGG-CGCgCGgGGgCg -3'
miRNA:   3'- gGGUC-----CGGUGGGCCgGCGgGCgCCgG- -5'
9186 3' -68.4 NC_002512.2 + 152114 0.66 0.521382
Target:  5'- gCCCAcGaGUCAUCCGGUCGCguguccgacaCGCGGgCa -3'
miRNA:   3'- -GGGU-C-CGGUGGGCCGGCGg---------GCGCCgG- -5'
9186 3' -68.4 NC_002512.2 + 107015 0.66 0.521382
Target:  5'- gCCgCGGGCCGagagCCGGaCGCggagcgccgCCGgGGCCg -3'
miRNA:   3'- -GG-GUCCGGUg---GGCCgGCG---------GGCgCCGG- -5'
9186 3' -68.4 NC_002512.2 + 85110 0.66 0.521382
Target:  5'- gCCCGGGCgCGCaa---CGCCCGggaCGGCCg -3'
miRNA:   3'- -GGGUCCG-GUGggccgGCGGGC---GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 47267 0.66 0.521382
Target:  5'- gCCCA-GCaGCUCcGCCGCCagcaagaaGCGGCCc -3'
miRNA:   3'- -GGGUcCGgUGGGcCGGCGGg-------CGCCGG- -5'
9186 3' -68.4 NC_002512.2 + 42424 0.66 0.521382
Target:  5'- aCCCuGGCUuUCCGGCUcaagGCCUacaaGGCCg -3'
miRNA:   3'- -GGGuCCGGuGGGCCGG----CGGGcg--CCGG- -5'
9186 3' -68.4 NC_002512.2 + 86981 0.66 0.521382
Target:  5'- aUCgAGGuCCGgUUGGCCGCCCucucguaguGCGcGCCc -3'
miRNA:   3'- -GGgUCC-GGUgGGCCGGCGGG---------CGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 106499 0.66 0.521382
Target:  5'- uCCCGGGgagagcgCGCCgCGGuucCCGCgCGCGcGCCg -3'
miRNA:   3'- -GGGUCCg------GUGG-GCC---GGCGgGCGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 66224 0.66 0.521382
Target:  5'- uCCCcGGCCAgCUuggcggugacgGGCCGCCCGUagauGGaCg -3'
miRNA:   3'- -GGGuCCGGUgGG-----------CCGGCGGGCG----CCgG- -5'
9186 3' -68.4 NC_002512.2 + 109207 0.66 0.521382
Target:  5'- aCCCGGGCgACCCGaCgGgCaaggGCGGCg -3'
miRNA:   3'- -GGGUCCGgUGGGCcGgCgGg---CGCCGg -5'
9186 3' -68.4 NC_002512.2 + 18945 0.66 0.521382
Target:  5'- gCUCGGGgUGCCC-GCCGCCCaCGaGCUc -3'
miRNA:   3'- -GGGUCCgGUGGGcCGGCGGGcGC-CGG- -5'
9186 3' -68.4 NC_002512.2 + 19616 0.66 0.521382
Target:  5'- gCgAGGCCG-CCGaGCC-CCCGaCGGUCc -3'
miRNA:   3'- gGgUCCGGUgGGC-CGGcGGGC-GCCGG- -5'
9186 3' -68.4 NC_002512.2 + 29995 0.66 0.521382
Target:  5'- gCCGGGCC-CCCucgcgcGCCGCCa-CGGUa -3'
miRNA:   3'- gGGUCCGGuGGGc-----CGGCGGgcGCCGg -5'
9186 3' -68.4 NC_002512.2 + 126198 0.66 0.520511
Target:  5'- uCCCGccgcguccGCCGCCCucugcgacgucgaGG-CGCUCGUGGCCg -3'
miRNA:   3'- -GGGUc-------CGGUGGG-------------CCgGCGGGCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.