miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 219220 0.66 0.989483
Target:  5'- gGGcCGGCCUC-GGCgaGgUCGGGAUCg -3'
miRNA:   3'- gCUaGCUGGAGuUCGg-CaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 112154 0.66 0.989483
Target:  5'- gCGGUCGACggCGAGCCGgcgcUCGaGcCCg -3'
miRNA:   3'- -GCUAGCUGgaGUUCGGCa---AGCcCuGG- -5'
9193 3' -54.3 NC_002512.2 + 99709 0.66 0.989483
Target:  5'- --cUCGuCCUCGuccgcGCCG-UCGcGGGCCg -3'
miRNA:   3'- gcuAGCuGGAGUu----CGGCaAGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 11273 0.66 0.989483
Target:  5'- uCGAUUGugUUCAugguGCCcacagCGGGACg -3'
miRNA:   3'- -GCUAGCugGAGUu---CGGcaa--GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 95552 0.66 0.989483
Target:  5'- gGAgcUCGGCCgcggCGAGuCCG-UCGGcGCCg -3'
miRNA:   3'- gCU--AGCUGGa---GUUC-GGCaAGCCcUGG- -5'
9193 3' -54.3 NC_002512.2 + 134858 0.66 0.989482
Target:  5'- cCGcgCGACguCUCGGgcgacGCCGUcgGGGACCu -3'
miRNA:   3'- -GCuaGCUG--GAGUU-----CGGCAagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 127385 0.66 0.989482
Target:  5'- --cUCGuCCUCcccguccGCCGccugCGGGACCg -3'
miRNA:   3'- gcuAGCuGGAGuu-----CGGCaa--GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 187625 0.66 0.989482
Target:  5'- -cAUCGcCCUCuuucGGCCGUcCGcGGAUCg -3'
miRNA:   3'- gcUAGCuGGAGu---UCGGCAaGC-CCUGG- -5'
9193 3' -54.3 NC_002512.2 + 126263 0.66 0.98813
Target:  5'- cCGAagcCGACCUCcAGCgGUacCGGGagGCCg -3'
miRNA:   3'- -GCUa--GCUGGAGuUCGgCAa-GCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 11111 0.66 0.98813
Target:  5'- --cUCGGCCUCGuccCCGgaCGGGgaACCg -3'
miRNA:   3'- gcuAGCUGGAGUuc-GGCaaGCCC--UGG- -5'
9193 3' -54.3 NC_002512.2 + 75222 0.66 0.98813
Target:  5'- aCGGUCGcCCgacgUCGgacGGUCGcUCGGGACg -3'
miRNA:   3'- -GCUAGCuGG----AGU---UCGGCaAGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 44329 0.66 0.98813
Target:  5'- aGGUCc-CCUCGacGGCCacgccgCGGGGCCg -3'
miRNA:   3'- gCUAGcuGGAGU--UCGGcaa---GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 41791 0.66 0.98813
Target:  5'- gCGggCGACCgaguuGCCGUucUCGcGGACg -3'
miRNA:   3'- -GCuaGCUGGaguu-CGGCA--AGC-CCUGg -5'
9193 3' -54.3 NC_002512.2 + 40662 0.66 0.98813
Target:  5'- gCGAUCguucuuuguGACCgggCAAGCgGUUCGGaGCg -3'
miRNA:   3'- -GCUAG---------CUGGa--GUUCGgCAAGCCcUGg -5'
9193 3' -54.3 NC_002512.2 + 178786 0.66 0.98813
Target:  5'- --uUCGACUUCAGcGCCGaccucUUGGcGGCCa -3'
miRNA:   3'- gcuAGCUGGAGUU-CGGCa----AGCC-CUGG- -5'
9193 3' -54.3 NC_002512.2 + 221244 0.66 0.98813
Target:  5'- uCGAUCGGCCggccgCGgcggaAGUCGggggacgCGGGGCg -3'
miRNA:   3'- -GCUAGCUGGa----GU-----UCGGCaa-----GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 107067 0.66 0.98813
Target:  5'- cCGGUCGACgCgcuGGaCGUagGGGACCc -3'
miRNA:   3'- -GCUAGCUG-GaguUCgGCAagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 216160 0.66 0.98813
Target:  5'- -cGUCGcgccCCUCAGGCucccgCGUcUCGGGAUCg -3'
miRNA:   3'- gcUAGCu---GGAGUUCG-----GCA-AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 88884 0.66 0.987988
Target:  5'- uCGGUCGccguCCuUCGcgaucgcGGuCCGUUCGGGAgCg -3'
miRNA:   3'- -GCUAGCu---GG-AGU-------UC-GGCAAGCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 220734 0.66 0.987256
Target:  5'- --uUCGACCUcCAccucauggagcgcugGGCCGUcgaggccgacgUCGGGuCCa -3'
miRNA:   3'- gcuAGCUGGA-GU---------------UCGGCA-----------AGCCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.