miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9193 3' -54.3 NC_002512.2 + 228144 0.67 0.981336
Target:  5'- aCGGgcgCGAgCUCAgguccacgcggAGCCGgagCGGGAgCg -3'
miRNA:   3'- -GCUa--GCUgGAGU-----------UCGGCaa-GCCCUgG- -5'
9193 3' -54.3 NC_002512.2 + 227998 0.68 0.956048
Target:  5'- cCGAg-GGCCg-GAGCCGgaCGGGACg -3'
miRNA:   3'- -GCUagCUGGagUUCGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 226316 0.68 0.966205
Target:  5'- ----gGGCCUgUggGCCGUggcUCGGGACg -3'
miRNA:   3'- gcuagCUGGA-GuuCGGCA---AGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 226195 0.68 0.95964
Target:  5'- gGGUCGACCUCc-GUCGgggaCGGGAggaCCu -3'
miRNA:   3'- gCUAGCUGGAGuuCGGCaa--GCCCU---GG- -5'
9193 3' -54.3 NC_002512.2 + 225827 0.72 0.814079
Target:  5'- ----gGACCUCGAGCCGcggGGGAUCg -3'
miRNA:   3'- gcuagCUGGAGUUCGGCaagCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 224087 0.67 0.976772
Target:  5'- aCGGagGACCUCAGGgggaCCGUgUCGGucgugguGACCa -3'
miRNA:   3'- -GCUagCUGGAGUUC----GGCA-AGCC-------CUGG- -5'
9193 3' -54.3 NC_002512.2 + 224059 0.66 0.983257
Target:  5'- aCGGUgCGACCauuUCGAcgccGCCGaaCGGGGCg -3'
miRNA:   3'- -GCUA-GCUGG---AGUU----CGGCaaGCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 222654 0.66 0.986647
Target:  5'- gCGA-CGGCCggcCGGGCCGa--GGGGCg -3'
miRNA:   3'- -GCUaGCUGGa--GUUCGGCaagCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 221244 0.66 0.98813
Target:  5'- uCGAUCGGCCggccgCGgcggaAGUCGggggacgCGGGGCg -3'
miRNA:   3'- -GCUAGCUGGa----GU-----UCGGCaa-----GCCCUGg -5'
9193 3' -54.3 NC_002512.2 + 221180 0.7 0.895876
Target:  5'- cCGAcCGACCUCgGAGUgGa-CGGGACCc -3'
miRNA:   3'- -GCUaGCUGGAG-UUCGgCaaGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 220798 0.66 0.983257
Target:  5'- gGAUCGuCCUCGAcCCGcUCGuGGuCCc -3'
miRNA:   3'- gCUAGCuGGAGUUcGGCaAGC-CCuGG- -5'
9193 3' -54.3 NC_002512.2 + 220734 0.66 0.987256
Target:  5'- --uUCGACCUcCAccucauggagcgcugGGCCGUcgaggccgacgUCGGGuCCa -3'
miRNA:   3'- gcuAGCUGGA-GU---------------UCGGCA-----------AGCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 220602 0.71 0.868831
Target:  5'- cCGGUCGugCgCGAGCUGgugcugugcCGGGACUg -3'
miRNA:   3'- -GCUAGCugGaGUUCGGCaa-------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 220485 0.67 0.976058
Target:  5'- -cGUCcGCCUCAcccgcagcgaGGCCGUggccugcgucgccCGGGACCu -3'
miRNA:   3'- gcUAGcUGGAGU----------UCGGCAa------------GCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 220342 0.66 0.983982
Target:  5'- cCGGaCGGCCUCGucaacgccguGGCCGUggCcgccgccgccgugcuGGGGCCg -3'
miRNA:   3'- -GCUaGCUGGAGU----------UCGGCAa-G---------------CCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 219220 0.66 0.989483
Target:  5'- gGGcCGGCCUC-GGCgaGgUCGGGAUCg -3'
miRNA:   3'- gCUaGCUGGAGuUCGg-CaAGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218496 0.66 0.985025
Target:  5'- gGGUCGuCCgcgucCGAGCCG-UC-GGACCc -3'
miRNA:   3'- gCUAGCuGGa----GUUCGGCaAGcCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 218206 0.67 0.968899
Target:  5'- --cUCGggcccccGCCUCGGGCCGcggCGGG-CCg -3'
miRNA:   3'- gcuAGC-------UGGAGUUCGGCaa-GCCCuGG- -5'
9193 3' -54.3 NC_002512.2 + 216160 0.66 0.98813
Target:  5'- -cGUCGcgccCCUCAGGCucccgCGUcUCGGGAUCg -3'
miRNA:   3'- gcUAGCu---GGAGUUCG-----GCA-AGCCCUGG- -5'
9193 3' -54.3 NC_002512.2 + 216047 0.68 0.956048
Target:  5'- gCGAgugCGAC----GGgCGUUCGGGGCCg -3'
miRNA:   3'- -GCUa--GCUGgaguUCgGCAAGCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.