miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 3' -62.9 NC_002512.2 + 228412 0.66 0.69794
Target:  5'- --gGACgGGGCGCUgGgGGGCggggGCGg -3'
miRNA:   3'- aagCUGgCCCGCGAgCgCCUGga--CGC- -5'
9198 3' -62.9 NC_002512.2 + 228034 0.66 0.688547
Target:  5'- -gCGACCGGacggcggcgaGaCGCcCGCGGACggCUGCGg -3'
miRNA:   3'- aaGCUGGCC----------C-GCGaGCGCCUG--GACGC- -5'
9198 3' -62.9 NC_002512.2 + 227562 0.68 0.593522
Target:  5'- -gCGACCGaGGC-CUC-CGGACCgccgGCGc -3'
miRNA:   3'- aaGCUGGC-CCGcGAGcGCCUGGa---CGC- -5'
9198 3' -62.9 NC_002512.2 + 227425 0.66 0.716574
Target:  5'- cUCGcGCgCGGGCGCgggcCGCGGucACCUucGCGc -3'
miRNA:   3'- aAGC-UG-GCCCGCGa---GCGCC--UGGA--CGC- -5'
9198 3' -62.9 NC_002512.2 + 227195 0.66 0.716574
Target:  5'- -gCGGCa-GGCGCUcccgcgCGCGGACCaggagGCGg -3'
miRNA:   3'- aaGCUGgcCCGCGA------GCGCCUGGa----CGC- -5'
9198 3' -62.9 NC_002512.2 + 226484 0.71 0.406921
Target:  5'- -cCGGggcCCGGGCGCUccccucgcCGCGGGuCCUGCu -3'
miRNA:   3'- aaGCU---GGCCCGCGA--------GCGCCU-GGACGc -5'
9198 3' -62.9 NC_002512.2 + 226371 0.67 0.631583
Target:  5'- -gCGAUCGaaGGUcgGCgCGUGGGCCUGCGa -3'
miRNA:   3'- aaGCUGGC--CCG--CGaGCGCCUGGACGC- -5'
9198 3' -62.9 NC_002512.2 + 225796 0.68 0.554915
Target:  5'- -cCGGCCGGGcCGCggGCGGccgggugGCCUGgGa -3'
miRNA:   3'- aaGCUGGCCC-GCGagCGCC-------UGGACgC- -5'
9198 3' -62.9 NC_002512.2 + 222244 0.67 0.660153
Target:  5'- cUUCGucGCCGuGGCGgguCUCGUGauGGCCUGCGc -3'
miRNA:   3'- -AAGC--UGGC-CCGC---GAGCGC--CUGGACGC- -5'
9198 3' -62.9 NC_002512.2 + 221908 0.66 0.69794
Target:  5'- --gGAUCGGGCGCcagCGCGcgauGGCCUgguGCGg -3'
miRNA:   3'- aagCUGGCCCGCGa--GCGC----CUGGA---CGC- -5'
9198 3' -62.9 NC_002512.2 + 221158 0.66 0.69794
Target:  5'- gUCGACgggCGGGCGCgCGCGG-CCgacCGa -3'
miRNA:   3'- aAGCUG---GCCCGCGaGCGCCuGGac-GC- -5'
9198 3' -62.9 NC_002512.2 + 220390 0.67 0.649689
Target:  5'- --gGGCCGGccgucgucuacccGcCGCUCGCGGGCCcGCc -3'
miRNA:   3'- aagCUGGCC-------------C-GCGAGCGCCUGGaCGc -5'
9198 3' -62.9 NC_002512.2 + 219849 0.67 0.669647
Target:  5'- -cCGGCCcggGGGCGgaUCGCGGACggGUGa -3'
miRNA:   3'- aaGCUGG---CCCGCg-AGCGCCUGgaCGC- -5'
9198 3' -62.9 NC_002512.2 + 219048 0.69 0.50079
Target:  5'- gUCGGCCGcGGCGCggggcucccCGCGGGCUU-CGa -3'
miRNA:   3'- aAGCUGGC-CCGCGa--------GCGCCUGGAcGC- -5'
9198 3' -62.9 NC_002512.2 + 218451 0.68 0.593522
Target:  5'- -cCGuCCGcGGCGUcccCGCGGACC-GCGg -3'
miRNA:   3'- aaGCuGGC-CCGCGa--GCGCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 214407 0.66 0.725801
Target:  5'- cUUCgGGCCGGaGCGCgccgCGCccgaGGACC-GCGu -3'
miRNA:   3'- -AAG-CUGGCC-CGCGa---GCG----CCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 213745 0.67 0.660153
Target:  5'- -cCGACCGGGCGCagGCcGcCCgGCa -3'
miRNA:   3'- aaGCUGGCCCGCGagCGcCuGGaCGc -5'
9198 3' -62.9 NC_002512.2 + 211335 0.66 0.679114
Target:  5'- -cCGGgcCCGGGCGCUgGgGGACgCgcGCGg -3'
miRNA:   3'- aaGCU--GGCCCGCGAgCgCCUG-Ga-CGC- -5'
9198 3' -62.9 NC_002512.2 + 209954 0.71 0.426472
Target:  5'- cUCGACCGGGCGCggguccucaaggUCGCcaacggcuucccGGgguuccuccgcgaccGCCUGCGg -3'
miRNA:   3'- aAGCUGGCCCGCG------------AGCG------------CC---------------UGGACGC- -5'
9198 3' -62.9 NC_002512.2 + 204743 0.66 0.69794
Target:  5'- --gGAcCCGGGUGCUCaGCGaucccGGCCUGgGg -3'
miRNA:   3'- aagCU-GGCCCGCGAG-CGC-----CUGGACgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.