miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 3' -60.5 NC_002512.2 + 110513 0.66 0.858412
Target:  5'- aGGGCCGCCGCGucguccaccaucccGCGggCGGAgaaggcCCGg -3'
miRNA:   3'- gCCUGGCGGUGCua------------CGCgaGCCU------GGC- -5'
9205 3' -60.5 NC_002512.2 + 149246 0.66 0.857693
Target:  5'- cCGGcGCCGCCGCc--GCGgaCGG-CCGg -3'
miRNA:   3'- -GCC-UGGCGGUGcuaCGCgaGCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 88598 0.66 0.857693
Target:  5'- cCGGuGCCGCC---GUGCGCgCGG-CCGg -3'
miRNA:   3'- -GCC-UGGCGGugcUACGCGaGCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 10465 0.66 0.857693
Target:  5'- aGGccGCCGCCGCcccgggcGUGgGCgucgcggCGGGCCGa -3'
miRNA:   3'- gCC--UGGCGGUGc------UACgCGa------GCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 119337 0.66 0.857693
Target:  5'- -uGGCCGCCGag--GUGCUCcGGGCCu -3'
miRNA:   3'- gcCUGGCGGUgcuaCGCGAG-CCUGGc -5'
9205 3' -60.5 NC_002512.2 + 10771 0.66 0.857693
Target:  5'- uCGGccCCGCCGCGGUagGCGUaguagCGG-CCGa -3'
miRNA:   3'- -GCCu-GGCGGUGCUA--CGCGa----GCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 94585 0.66 0.857693
Target:  5'- gGGACCGCCG-GAcagGCGaaCUgGGGCCc -3'
miRNA:   3'- gCCUGGCGGUgCUa--CGC--GAgCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 124322 0.66 0.857693
Target:  5'- gGGGCCGCgGCGGacGUGCUgCGG-CUGu -3'
miRNA:   3'- gCCUGGCGgUGCUa-CGCGA-GCCuGGC- -5'
9205 3' -60.5 NC_002512.2 + 147028 0.66 0.857693
Target:  5'- aCGGucaacguCUuCCugGAccUGCGCgCGGACCGg -3'
miRNA:   3'- -GCCu------GGcGGugCU--ACGCGaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 181951 0.66 0.857693
Target:  5'- uCGGGCUGUgACGGUGUa--UGGACCGc -3'
miRNA:   3'- -GCCUGGCGgUGCUACGcgaGCCUGGC- -5'
9205 3' -60.5 NC_002512.2 + 110800 0.66 0.857693
Target:  5'- aGGuCCGCCGCGAUGUuCUCcuccCCGa -3'
miRNA:   3'- gCCuGGCGGUGCUACGcGAGccu-GGC- -5'
9205 3' -60.5 NC_002512.2 + 114395 0.66 0.857693
Target:  5'- cCGGcgacCCGCCACuc-GCGCUCaucucGACCGg -3'
miRNA:   3'- -GCCu---GGCGGUGcuaCGCGAGc----CUGGC- -5'
9205 3' -60.5 NC_002512.2 + 191693 0.66 0.857693
Target:  5'- cCGGACCGUgCugGAgGCGCU-GGAUa- -3'
miRNA:   3'- -GCCUGGCG-GugCUaCGCGAgCCUGgc -5'
9205 3' -60.5 NC_002512.2 + 226407 0.66 0.857693
Target:  5'- gGGAcCCGUCGCGuccGCGuCUCcGGACgCGg -3'
miRNA:   3'- gCCU-GGCGGUGCua-CGC-GAG-CCUG-GC- -5'
9205 3' -60.5 NC_002512.2 + 186485 0.66 0.856973
Target:  5'- gCGGAUCGCCgaguucguccacuACGcgGcCGUcCGGGCCa -3'
miRNA:   3'- -GCCUGGCGG-------------UGCuaC-GCGaGCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 170167 0.66 0.856973
Target:  5'- cCGGAucaCCGCCAUG-UGCGCcagcgugauguucUCGG-CCa -3'
miRNA:   3'- -GCCU---GGCGGUGCuACGCG-------------AGCCuGGc -5'
9205 3' -60.5 NC_002512.2 + 121944 0.66 0.856973
Target:  5'- cCGGAcCCGCgGCGAUGauguuCGCUCacggucgGGAuCCGa -3'
miRNA:   3'- -GCCU-GGCGgUGCUAC-----GCGAG-------CCU-GGC- -5'
9205 3' -60.5 NC_002512.2 + 169986 0.66 0.850411
Target:  5'- aCGucCCGCuCGCcGUGCGC-CGGaACCGg -3'
miRNA:   3'- -GCcuGGCG-GUGcUACGCGaGCC-UGGC- -5'
9205 3' -60.5 NC_002512.2 + 121566 0.66 0.850411
Target:  5'- -cGACCGCC-CGccGCGCgccgccaUGGACCa -3'
miRNA:   3'- gcCUGGCGGuGCuaCGCGa------GCCUGGc -5'
9205 3' -60.5 NC_002512.2 + 137302 0.66 0.850411
Target:  5'- gGGACCGCCGCcccucccggccGcgGCG-UCGGcGCCu -3'
miRNA:   3'- gCCUGGCGGUG-----------CuaCGCgAGCC-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.