miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 158979 0.66 0.976494
Target:  5'- uUCGGCGgcCACggcgggGCGGAGGCGG-CGGc -3'
miRNA:   3'- gAGCCGC--GUGag----CGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 217890 0.66 0.976494
Target:  5'- aUCGGCGgcCGCgUCGuCGAGcGGCGGUaCGAg -3'
miRNA:   3'- gAGCCGC--GUG-AGC-GUUU-UCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 87134 0.66 0.976494
Target:  5'- -gCGGCGCACgaGCuggacAAGGCGGgcaacgCGAa -3'
miRNA:   3'- gaGCCGCGUGagCGu----UUUCGCCa-----GCU- -5'
9205 5' -55.1 NC_002512.2 + 107065 0.66 0.976494
Target:  5'- -gCGGCcucCAuCUCGUucucGGGGGCGGUCGGg -3'
miRNA:   3'- gaGCCGc--GU-GAGCG----UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 41255 0.66 0.976494
Target:  5'- -cCGGCGCcCUUGCGGcccGAGCGcUCGu -3'
miRNA:   3'- gaGCCGCGuGAGCGUU---UUCGCcAGCu -5'
9205 5' -55.1 NC_002512.2 + 80855 0.66 0.976494
Target:  5'- cCUCGGgaCGCgggGCUCGguGucGGGCGGUCc- -3'
miRNA:   3'- -GAGCC--GCG---UGAGCguU--UUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 113653 0.66 0.976253
Target:  5'- gUUGGCGCggccgGC-CGCGAGGGUgcgcgcgGGUCGGa -3'
miRNA:   3'- gAGCCGCG-----UGaGCGUUUUCG-------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 94506 0.66 0.976253
Target:  5'- gUCgGGCGCGuCUucgaaccCGCccaggacGAAGCGGUCGAc -3'
miRNA:   3'- gAG-CCGCGU-GA-------GCGu------UUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 95957 0.66 0.975767
Target:  5'- -gCGGgGgGCUgaggcccggguuggCGCAGcGGCGGUCGGc -3'
miRNA:   3'- gaGCCgCgUGA--------------GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 4004 0.66 0.974006
Target:  5'- -gCGGgGgGCgUCGCAGGAGuCGcGUCGGa -3'
miRNA:   3'- gaGCCgCgUG-AGCGUUUUC-GC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 97354 0.66 0.974006
Target:  5'- -aCGGCGcCGCcCGCGGAgcggggaccgcGGCGGcCGGa -3'
miRNA:   3'- gaGCCGC-GUGaGCGUUU-----------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 82351 0.66 0.974006
Target:  5'- -gCGGUGgGCgUGCGGGGGCGG-CGGa -3'
miRNA:   3'- gaGCCGCgUGaGCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 104353 0.66 0.974006
Target:  5'- -gCGGCG-GCUCGCuu-GGUGGaUCGGu -3'
miRNA:   3'- gaGCCGCgUGAGCGuuuUCGCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 62578 0.66 0.974006
Target:  5'- aCUCgaGGCGCACggggUCGCGGAAcaGGUCGc -3'
miRNA:   3'- -GAG--CCGCGUG----AGCGUUUUcgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 81350 0.66 0.974006
Target:  5'- gUgGGCGCcuccCUCGCGgccGGGGCGGgCGGc -3'
miRNA:   3'- gAgCCGCGu---GAGCGU---UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 153391 0.66 0.974006
Target:  5'- -cCGGaGCgACguggagCGCGGcGGCGGUCGAg -3'
miRNA:   3'- gaGCCgCG-UGa-----GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 112939 0.66 0.974006
Target:  5'- -gUGGCGCGCgagccCGCGGAccgGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGa----GCGUUUucgCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 146088 0.66 0.974006
Target:  5'- -cCGGCGCGCccgaCGCGGuccucGGCGG-CGGc -3'
miRNA:   3'- gaGCCGCGUGa---GCGUUu----UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 113058 0.66 0.971333
Target:  5'- gUCGGagcCGCACgaggGCc-AGGCGGUCGAc -3'
miRNA:   3'- gAGCC---GCGUGag--CGuuUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 148816 0.66 0.971333
Target:  5'- uCUCGGa--GCUCGUccuGGGGGCGGUCc- -3'
miRNA:   3'- -GAGCCgcgUGAGCG---UUUUCGCCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.