Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9211 | 3' | -60.7 | NC_002512.2 | + | 160777 | 0.66 | 0.812786 |
Target: 5'- cGGA-GCggGGCCG-GCGCAGCaGCa- -3' miRNA: 3'- cCCUgCGa-CCGGCaCGCGUCGcUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 119967 | 0.66 | 0.812786 |
Target: 5'- -uGGCGCUggGGCCGaacGCGC-GCGACg- -3' miRNA: 3'- ccCUGCGA--CCGGCa--CGCGuCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 117433 | 0.66 | 0.812786 |
Target: 5'- -uGACGCUGGCCGUGaUGCaccAGaaGCUGu -3' miRNA: 3'- ccCUGCGACCGGCAC-GCG---UCgcUGAU- -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 100049 | 0.66 | 0.812785 |
Target: 5'- cGGGCGCUGagacGCgG-GgGCGGCGGCg- -3' miRNA: 3'- cCCUGCGAC----CGgCaCgCGUCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 97146 | 0.66 | 0.812785 |
Target: 5'- cGGGACGac-GCCGcgcUGCGCcuGCGGCa- -3' miRNA: 3'- -CCCUGCgacCGGC---ACGCGu-CGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 125515 | 0.66 | 0.804427 |
Target: 5'- cGGGAUGgUGaaccacgucuuGCCGUGcCGCcGCGGCa- -3' miRNA: 3'- -CCCUGCgAC-----------CGGCAC-GCGuCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 130137 | 0.66 | 0.804427 |
Target: 5'- gGGGugGUgucgcGGCCGcgggGCcCGGCGGCg- -3' miRNA: 3'- -CCCugCGa----CCGGCa---CGcGUCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 72797 | 0.66 | 0.804427 |
Target: 5'- cGGGACGggcccGCCGUGgGCgccGGCGACc- -3' miRNA: 3'- -CCCUGCgac--CGGCACgCG---UCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 28231 | 0.66 | 0.804427 |
Target: 5'- aGGAacCGCggccggGGCCGUcGCGCcGCGAgUAc -3' miRNA: 3'- cCCU--GCGa-----CCGGCA-CGCGuCGCUgAU- -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 113149 | 0.66 | 0.804427 |
Target: 5'- cGGGGCGCcGGCCu--CGCcGCGGCc- -3' miRNA: 3'- -CCCUGCGaCCGGcacGCGuCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 110091 | 0.66 | 0.804427 |
Target: 5'- -uGGCGCagaGGCCG-GUGCAGCuGCUGu -3' miRNA: 3'- ccCUGCGa--CCGGCaCGCGUCGcUGAU- -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 104150 | 0.66 | 0.804427 |
Target: 5'- gGGGACGCgacGCCGgacaggaagGCGC-GCGuCUAc -3' miRNA: 3'- -CCCUGCGac-CGGCa--------CGCGuCGCuGAU- -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 133081 | 0.66 | 0.795929 |
Target: 5'- -aGGCGgUGGguCCGguuggcGCGCAGCGACUc -3' miRNA: 3'- ccCUGCgACC--GGCa-----CGCGUCGCUGAu -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 146940 | 0.66 | 0.795929 |
Target: 5'- -cGACcuGCUGGCCGUgaaGCGCGaCGACg- -3' miRNA: 3'- ccCUG--CGACCGGCA---CGCGUcGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 121893 | 0.66 | 0.795928 |
Target: 5'- gGGGACGCUcGGCgacGCGCGGgGAg-- -3' miRNA: 3'- -CCCUGCGA-CCGgcaCGCGUCgCUgau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 3442 | 0.66 | 0.795928 |
Target: 5'- cGGG-GCUGGUCG-GUGaCGGCGACg- -3' miRNA: 3'- cCCUgCGACCGGCaCGC-GUCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 105864 | 0.66 | 0.787296 |
Target: 5'- cGGGACG-UGGCCcagGgGCAGCG-Cg- -3' miRNA: 3'- -CCCUGCgACCGGca-CgCGUCGCuGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 67721 | 0.66 | 0.787296 |
Target: 5'- cGGACGC-GGCCGcuuuCGCGGuCGGCg- -3' miRNA: 3'- cCCUGCGaCCGGCac--GCGUC-GCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 217111 | 0.66 | 0.787296 |
Target: 5'- gGGGGCGCc-GCCGaGUccuGCGGCGGCa- -3' miRNA: 3'- -CCCUGCGacCGGCaCG---CGUCGCUGau -5' |
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9211 | 3' | -60.7 | NC_002512.2 | + | 191457 | 0.66 | 0.782056 |
Target: 5'- cGGGGCGUugaggugGGCCGagUacgaggcgccggacaGCGCGGCGACc- -3' miRNA: 3'- -CCCUGCGa------CCGGC--A---------------CGCGUCGCUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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