miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 3' -53.3 NC_002512.2 + 113647 0.66 0.993182
Target:  5'- gUCGUaGUuggCGCgGCCGGCCgCGAgGgUGCg -3'
miRNA:   3'- -AGUA-CAa--GCGgUGGUUGG-GCUgC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 72354 0.66 0.993182
Target:  5'- gUCAgcgGgUUGuCCACCAcguaGCCCGACGcGUu -3'
miRNA:   3'- -AGUa--CaAGC-GGUGGU----UGGGCUGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 21912 0.66 0.993182
Target:  5'- aCGUcucgUCGCCGCUAcggaggGCgaCGACGUGCc -3'
miRNA:   3'- aGUAca--AGCGGUGGU------UGg-GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 79800 0.66 0.993182
Target:  5'- ---cGUcCGUCuCCAucGCCCGACGgcgGCg -3'
miRNA:   3'- aguaCAaGCGGuGGU--UGGGCUGCa--CG- -5'
9212 3' -53.3 NC_002512.2 + 54090 0.66 0.993182
Target:  5'- gCcgGgaCGCCGCCAagcugucgGCCugCGACGUGa -3'
miRNA:   3'- aGuaCaaGCGGUGGU--------UGG--GCUGCACg -5'
9212 3' -53.3 NC_002512.2 + 38930 0.66 0.993182
Target:  5'- -------gGCCGCCGcggcgggcGCCCG-CGUGCg -3'
miRNA:   3'- aguacaagCGGUGGU--------UGGGCuGCACG- -5'
9212 3' -53.3 NC_002512.2 + 85264 0.66 0.993182
Target:  5'- gCGUGgcCGCCAcguCCAGCgCGGCGcggaccucgUGCg -3'
miRNA:   3'- aGUACaaGCGGU---GGUUGgGCUGC---------ACG- -5'
9212 3' -53.3 NC_002512.2 + 6181 0.66 0.993182
Target:  5'- cCGUGcgaGUCGCCGGCCagGACGaUGCc -3'
miRNA:   3'- aGUACaagCGGUGGUUGGg-CUGC-ACG- -5'
9212 3' -53.3 NC_002512.2 + 50588 0.66 0.993182
Target:  5'- -----cUCGCCGCCcgcgGACUgGACgGUGCg -3'
miRNA:   3'- aguacaAGCGGUGG----UUGGgCUG-CACG- -5'
9212 3' -53.3 NC_002512.2 + 118702 0.66 0.993182
Target:  5'- cCGUGggCuucccccgccuGCCGCUcGCCggCGACGUGCu -3'
miRNA:   3'- aGUACaaG-----------CGGUGGuUGG--GCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 65143 0.66 0.993182
Target:  5'- cCAUGgcggcgCGCUACCGGuCCuCGACGUc- -3'
miRNA:   3'- aGUACaa----GCGGUGGUU-GG-GCUGCAcg -5'
9212 3' -53.3 NC_002512.2 + 90892 0.66 0.993182
Target:  5'- --cUGUUCcCCACCGACCUGuCGaUGg -3'
miRNA:   3'- aguACAAGcGGUGGUUGGGCuGC-ACg -5'
9212 3' -53.3 NC_002512.2 + 106267 0.66 0.993182
Target:  5'- -gGUGaggUC-CCACCu-CCgGACGUGCu -3'
miRNA:   3'- agUACa--AGcGGUGGuuGGgCUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 210527 0.66 0.993182
Target:  5'- -------gGCCGCCGAgccCCCGACGguccgGCa -3'
miRNA:   3'- aguacaagCGGUGGUU---GGGCUGCa----CG- -5'
9212 3' -53.3 NC_002512.2 + 76168 0.66 0.993182
Target:  5'- aCAg---CGCCGugagacCCGACCagGACGUGCu -3'
miRNA:   3'- aGUacaaGCGGU------GGUUGGg-CUGCACG- -5'
9212 3' -53.3 NC_002512.2 + 205040 0.66 0.993182
Target:  5'- ---cGUcCGCCGCCGACCgGccGCGgGCc -3'
miRNA:   3'- aguaCAaGCGGUGGUUGGgC--UGCaCG- -5'
9212 3' -53.3 NC_002512.2 + 163952 0.66 0.993088
Target:  5'- aCGUGUUcaagaaCGUCACCAACCUGAaggacauCGaGCu -3'
miRNA:   3'- aGUACAA------GCGGUGGUUGGGCU-------GCaCG- -5'
9212 3' -53.3 NC_002512.2 + 142782 0.66 0.992199
Target:  5'- -gAUGUUcCGCCACCucCCCaGcACGUcGCc -3'
miRNA:   3'- agUACAA-GCGGUGGuuGGG-C-UGCA-CG- -5'
9212 3' -53.3 NC_002512.2 + 195216 0.66 0.992199
Target:  5'- aUCGUGUccgaugugUCGUCGCCcgcgauguCCCGACGaaGCc -3'
miRNA:   3'- -AGUACA--------AGCGGUGGuu------GGGCUGCa-CG- -5'
9212 3' -53.3 NC_002512.2 + 138522 0.66 0.992199
Target:  5'- uUCAggGUcgCGUCGuCCAGCCCGuCGaGCa -3'
miRNA:   3'- -AGUa-CAa-GCGGU-GGUUGGGCuGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.