Results 21 - 40 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 3' | -53.3 | NC_002512.2 | + | 219337 | 0.71 | 0.901468 |
Target: 5'- gCGUGgccCGCCGgCuGCCCGGCGUccGCg -3' miRNA: 3'- aGUACaa-GCGGUgGuUGGGCUGCA--CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 91826 | 0.71 | 0.881712 |
Target: 5'- cUCGUGUUCGUCACCcgGAUCCGGuCccGCa -3' miRNA: 3'- -AGUACAAGCGGUGG--UUGGGCU-GcaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 175436 | 0.71 | 0.881712 |
Target: 5'- uUCAgGUUCGCCACCGugCCGGu---- -3' miRNA: 3'- -AGUaCAAGCGGUGGUugGGCUgcacg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 44385 | 0.71 | 0.895104 |
Target: 5'- ---aGgcCcCCGCgCAGCCCGGCGUGCg -3' miRNA: 3'- aguaCaaGcGGUG-GUUGGGCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 107832 | 0.7 | 0.934855 |
Target: 5'- gUCGUcacaGCCGCCGACgCCGccccggGCGUGCg -3' miRNA: 3'- -AGUAcaagCGGUGGUUG-GGC------UGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 220647 | 0.7 | 0.934855 |
Target: 5'- gUCcUGUggcgcgagCGCCACCuGGCCCGccgcguCGUGCu -3' miRNA: 3'- -AGuACAa-------GCGGUGG-UUGGGCu-----GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 211534 | 0.7 | 0.929867 |
Target: 5'- cUCAUGUUCGaCAgCAugUuCGGCGUGUg -3' miRNA: 3'- -AGUACAAGCgGUgGUugG-GCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 20635 | 0.7 | 0.919199 |
Target: 5'- gUCcgGUUCGCCgaGCgGGCCCGGgacaggagcuCGUGUu -3' miRNA: 3'- -AGuaCAAGCGG--UGgUUGGGCU----------GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 173692 | 0.7 | 0.912937 |
Target: 5'- aCA-GUUCGUCACCGccguccugggacuGCCCGcgacCGUGCu -3' miRNA: 3'- aGUaCAAGCGGUGGU-------------UGGGCu---GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 187881 | 0.7 | 0.913518 |
Target: 5'- gUC-UGUaCGUCACCGACCgGACGUuCa -3' miRNA: 3'- -AGuACAaGCGGUGGUUGGgCUGCAcG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 114191 | 0.7 | 0.924114 |
Target: 5'- aUCuUGUUCuCCACCGugcuguaggcccgGCCCGAgcccaCGUGCa -3' miRNA: 3'- -AGuACAAGcGGUGGU-------------UGGGCU-----GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 153364 | 0.7 | 0.929867 |
Target: 5'- aUCAgaacgUCaGCCGgCAACUgGACGUGCg -3' miRNA: 3'- -AGUaca--AG-CGGUgGUUGGgCUGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 148386 | 0.69 | 0.956362 |
Target: 5'- -gGUGUUcaacCGCCugaaccugGCCGACCUGcCGUGCc -3' miRNA: 3'- agUACAA----GCGG--------UGGUUGGGCuGCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 222712 | 0.69 | 0.95251 |
Target: 5'- -aGUGcgUCGCCACCuGCCUgcugGACG-GCa -3' miRNA: 3'- agUACa-AGCGGUGGuUGGG----CUGCaCG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 105136 | 0.69 | 0.948436 |
Target: 5'- -----gUCGUCGCCGcACCCGACGgacGCc -3' miRNA: 3'- aguacaAGCGGUGGU-UGGGCUGCa--CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 90953 | 0.69 | 0.952113 |
Target: 5'- gCGUGggCGCgacgaucCACCAgauccugcgggACCCGAgCGUGCu -3' miRNA: 3'- aGUACaaGCG-------GUGGU-----------UGGGCU-GCACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 157488 | 0.69 | 0.95251 |
Target: 5'- -gGUGUUCGCCAUCcugcagAACCUGGCGc-- -3' miRNA: 3'- agUACAAGCGGUGG------UUGGGCUGCacg -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 124730 | 0.69 | 0.956362 |
Target: 5'- --cUGUUCcCCGCCGACUCGGCcUGUu -3' miRNA: 3'- aguACAAGcGGUGGUUGGGCUGcACG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 144376 | 0.69 | 0.95251 |
Target: 5'- gUCcUGUUCGCCACCGAguaCGACacgGCc -3' miRNA: 3'- -AGuACAAGCGGUGGUUgg-GCUGca-CG- -5' |
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9212 | 3' | -53.3 | NC_002512.2 | + | 59564 | 0.69 | 0.956362 |
Target: 5'- cUCAUGUUgcaaGCCGCC-ACCCcAUGUGa -3' miRNA: 3'- -AGUACAAg---CGGUGGuUGGGcUGCACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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