miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 3' -66.7 NC_002512.2 + 184545 0.66 0.584225
Target:  5'- -aGCCGgCGGCGCgggCCggcgGaCGGCCCu- -3'
miRNA:   3'- ggCGGCgGCCGCG---GGaa--C-GCCGGGcu -5'
9234 3' -66.7 NC_002512.2 + 98831 0.66 0.584225
Target:  5'- uCgGCCuCCGGCGCggcgccguccucCCccGCGGcCCCGAc -3'
miRNA:   3'- -GgCGGcGGCCGCG------------GGaaCGCC-GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 24847 0.66 0.584224
Target:  5'- cCCGCgGCCGGuCGgCggcggacGCGGcCCCGAc -3'
miRNA:   3'- -GGCGgCGGCC-GCgGgaa----CGCC-GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 123215 0.66 0.584224
Target:  5'- cCCGaggaCGUCGcCGCCCagUGCGgGCUCGAc -3'
miRNA:   3'- -GGCg---GCGGCcGCGGGa-ACGC-CGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 29173 0.66 0.584224
Target:  5'- aCCGCCgGgCGGCaGCCCgacGCcaCCCGAg -3'
miRNA:   3'- -GGCGG-CgGCCG-CGGGaa-CGccGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 223506 0.66 0.581484
Target:  5'- cCCGUCGCgacgaccaCGGCggagaacggcacgcGCCC--GCGGCCCGc -3'
miRNA:   3'- -GGCGGCG--------GCCG--------------CGGGaaCGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 123660 0.66 0.580571
Target:  5'- aCGCCG-CGGCGgCCgggcucggggaaGCGGUCCGu -3'
miRNA:   3'- gGCGGCgGCCGCgGGaa----------CGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 217115 0.66 0.575101
Target:  5'- gCGCCGCCGa-GUCCUgcgGCGGCagcagCGGg -3'
miRNA:   3'- gGCGGCGGCcgCGGGAa--CGCCGg----GCU- -5'
9234 3' -66.7 NC_002512.2 + 111579 0.66 0.575101
Target:  5'- cUCGUCGUCcGCGCgCU--CGGCCCGGa -3'
miRNA:   3'- -GGCGGCGGcCGCGgGAacGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 221445 0.66 0.575101
Target:  5'- aCCGCgGCCGGggcgcgguCGUCCgacCGGCCgCGGu -3'
miRNA:   3'- -GGCGgCGGCC--------GCGGGaacGCCGG-GCU- -5'
9234 3' -66.7 NC_002512.2 + 128026 0.66 0.575101
Target:  5'- cCCGCC-CCGGCGUCgaagagCUgcaCGGcCCCGAc -3'
miRNA:   3'- -GGCGGcGGCCGCGG------GAac-GCC-GGGCU- -5'
9234 3' -66.7 NC_002512.2 + 121995 0.66 0.5751
Target:  5'- -aGCCuuuaUCGGCGCCCggaGgGGCCgGAg -3'
miRNA:   3'- ggCGGc---GGCCGCGGGaa-CgCCGGgCU- -5'
9234 3' -66.7 NC_002512.2 + 45308 0.66 0.5751
Target:  5'- aCCGCCGCCcuGCcgGCCC--GCGGgUCGGa -3'
miRNA:   3'- -GGCGGCGGc-CG--CGGGaaCGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 2295 0.66 0.5751
Target:  5'- nCGCUGCggguggCGGgGCUCUgcugcgccgGCGGUCCGGa -3'
miRNA:   3'- gGCGGCG------GCCgCGGGAa--------CGCCGGGCU- -5'
9234 3' -66.7 NC_002512.2 + 135044 0.66 0.5751
Target:  5'- cUCGCCG-CGGCcacGCUCUUccuccgGCGGCuCCGGg -3'
miRNA:   3'- -GGCGGCgGCCG---CGGGAA------CGCCG-GGCU- -5'
9234 3' -66.7 NC_002512.2 + 10776 0.66 0.5751
Target:  5'- cCCGCCGCgguaGGCGUaguaGCGG-CCGAa -3'
miRNA:   3'- -GGCGGCGg---CCGCGggaaCGCCgGGCU- -5'
9234 3' -66.7 NC_002512.2 + 50164 0.66 0.5751
Target:  5'- aCG-CGCUGGCGUUCUU-CGGCgCGAu -3'
miRNA:   3'- gGCgGCGGCCGCGGGAAcGCCGgGCU- -5'
9234 3' -66.7 NC_002512.2 + 71485 0.66 0.5751
Target:  5'- aUGUCGCgGGUGCCCaUGCcGCCgGu -3'
miRNA:   3'- gGCGGCGgCCGCGGGaACGcCGGgCu -5'
9234 3' -66.7 NC_002512.2 + 110319 0.66 0.5751
Target:  5'- aC-CCGCCGG-GCUCccGCGGUCCGc -3'
miRNA:   3'- gGcGGCGGCCgCGGGaaCGCCGGGCu -5'
9234 3' -66.7 NC_002512.2 + 115080 0.66 0.57237
Target:  5'- aCGUCGCgCGGCGCCUggccacccgcgugcaGCGGgCCa- -3'
miRNA:   3'- gGCGGCG-GCCGCGGGaa-------------CGCCgGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.