miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 156473 0.66 0.975724
Target:  5'- -cUCggggGCgGCGGG-CUCGGCGGgCUg -3'
miRNA:   3'- gaAGaa--CGgCGUCCuGAGCUGCUgGA- -5'
9234 5' -55.1 NC_002512.2 + 149227 0.72 0.761634
Target:  5'- -----cGCCGCGGGAC-CGACgGACCc -3'
miRNA:   3'- gaagaaCGGCGUCCUGaGCUG-CUGGa -5'
9234 5' -55.1 NC_002512.2 + 148756 0.67 0.949742
Target:  5'- cCUUCUUcgUGCGcGACuUCGACGACCUg -3'
miRNA:   3'- -GAAGAAcgGCGUcCUG-AGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 146739 0.72 0.742815
Target:  5'- -----gGCCGCcGGGCcCGACGACCUc -3'
miRNA:   3'- gaagaaCGGCGuCCUGaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 146177 0.77 0.500968
Target:  5'- ----cUGCCGCGcggcacggucgcccuGGGCUCGACGACCg -3'
miRNA:   3'- gaagaACGGCGU---------------CCUGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 145931 0.66 0.973175
Target:  5'- -----cGCCGcCGGGACUUcuuCGACCUg -3'
miRNA:   3'- gaagaaCGGC-GUCCUGAGcu-GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 145249 0.67 0.941112
Target:  5'- aCUUCcuggGCCGCcgccuGGA--CGACGACCUg -3'
miRNA:   3'- -GAAGaa--CGGCGu----CCUgaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 144621 0.66 0.961035
Target:  5'- -----cGCCGCGcuGGACgUGGCGGCCa -3'
miRNA:   3'- gaagaaCGGCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 142049 0.66 0.975724
Target:  5'- -----cGCCGCgAGGGCcCGACGcCCg -3'
miRNA:   3'- gaagaaCGGCG-UCCUGaGCUGCuGGa -5'
9234 5' -55.1 NC_002512.2 + 142023 0.67 0.941112
Target:  5'- uCUUCcgcgGCCG-GGGGC-CGGCGACCc -3'
miRNA:   3'- -GAAGaa--CGGCgUCCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 130656 0.67 0.949742
Target:  5'- aCUUCUg--CGCGGGGCUCuccGAgGACCg -3'
miRNA:   3'- -GAAGAacgGCGUCCUGAG---CUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 130145 0.74 0.664522
Target:  5'- -gUCgcgGCCGCGGGGCcCGGCGGCg- -3'
miRNA:   3'- gaAGaa-CGGCGUCCUGaGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 129372 0.73 0.694298
Target:  5'- cCUUC-UGUCucguGCGGGuGCUCGACGACCg -3'
miRNA:   3'- -GAAGaACGG----CGUCC-UGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 124857 0.69 0.903742
Target:  5'- uUUC-UGCuacaugaccugCGCGGGGCUCGACGcGCCc -3'
miRNA:   3'- gAAGaACG-----------GCGUCCUGAGCUGC-UGGa -5'
9234 5' -55.1 NC_002512.2 + 123224 0.66 0.969578
Target:  5'- -gUCgccGCCcaguGCGGGcucgacuucuucgaGCUCGACGACCg -3'
miRNA:   3'- gaAGaa-CGG----CGUCC--------------UGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 121983 0.66 0.974727
Target:  5'- -----cGCCgGCGGGACgagaggaagaucgCGGCGGCCa -3'
miRNA:   3'- gaagaaCGG-CGUCCUGa------------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 121886 0.66 0.964373
Target:  5'- -----gGUCGCGGGggacGCUCGGCGACg- -3'
miRNA:   3'- gaagaaCGGCGUCC----UGAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 120751 0.67 0.95712
Target:  5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3'
miRNA:   3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 119358 0.68 0.936458
Target:  5'- cCUUCUccGcCCGCGGGAUgguggacgacgCGGCGGCCc -3'
miRNA:   3'- -GAAGAa-C-GGCGUCCUGa----------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 118608 0.7 0.831844
Target:  5'- -gUCUgGCCGCGGGACgUCGAC-AUCa -3'
miRNA:   3'- gaAGAaCGGCGUCCUG-AGCUGcUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.