miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 5' -58.8 NC_002512.2 + 32709 0.66 0.871683
Target:  5'- gGUCCAuGAGGaCGAAGAGGcgcggguggaagacGGCCGUg -3'
miRNA:   3'- -UAGGUcCUCCgGCUUCUCUa-------------CCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 126235 0.66 0.868831
Target:  5'- cUCguGGccGCCGAGGAG--GGCCGg -3'
miRNA:   3'- uAGguCCucCGGCUUCUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 137009 0.66 0.868831
Target:  5'- uGUCCAGuuucucccacGGGGaCCuGAuauAGGGGUGGCCGa -3'
miRNA:   3'- -UAGGUC----------CUCC-GG-CU---UCUCUACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 153303 0.66 0.868831
Target:  5'- gGUCCGGGucGGCCGGuucccgcuGGGGUgguuccgcugGGCCGg -3'
miRNA:   3'- -UAGGUCCu-CCGGCUu-------CUCUA----------CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 200423 0.66 0.868831
Target:  5'- ---gAGGAGGaCGAGGAGAaggGGUCGUc -3'
miRNA:   3'- uaggUCCUCCgGCUUCUCUa--CCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 185506 0.66 0.86156
Target:  5'- -gCCGGGcugcgcggGGGCCugccgcucuucGAGGGGGUGGCCu- -3'
miRNA:   3'- uaGGUCC--------UCCGG-----------CUUCUCUACCGGca -5'
9243 5' -58.8 NC_002512.2 + 157368 0.66 0.86156
Target:  5'- gGUCCGGGccgccgggcaGGGaCCGGAcGAGAUcGCCGg -3'
miRNA:   3'- -UAGGUCC----------UCC-GGCUU-CUCUAcCGGCa -5'
9243 5' -58.8 NC_002512.2 + 216225 0.66 0.86156
Target:  5'- cGUCCGGGAGcuggaGCCGcggcGAGAcGGUCGUc -3'
miRNA:   3'- -UAGGUCCUC-----CGGCuu--CUCUaCCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 4576 0.66 0.86156
Target:  5'- cGUCUGGGGcGGCgGAGGAGGcggcgccgcgGGCCGc -3'
miRNA:   3'- -UAGGUCCU-CCGgCUUCUCUa---------CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 170106 0.66 0.86156
Target:  5'- aAUCCAcc-GGCCGGuuGGGAUaGGCCGUa -3'
miRNA:   3'- -UAGGUccuCCGGCUu-CUCUA-CCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 133868 0.66 0.854096
Target:  5'- cGUCCuGGGGcGGCuCGAGGAGcggcucGGCCGg -3'
miRNA:   3'- -UAGG-UCCU-CCG-GCUUCUCua----CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 15555 0.66 0.854096
Target:  5'- -cUgAGGAGGCCGGAGucGUcGGCCu- -3'
miRNA:   3'- uaGgUCCUCCGGCUUCucUA-CCGGca -5'
9243 5' -58.8 NC_002512.2 + 226876 0.66 0.846444
Target:  5'- -cCCGGGAGGCCagGAAGgcccgGGAccgGGCCa- -3'
miRNA:   3'- uaGGUCCUCCGG--CUUC-----UCUa--CCGGca -5'
9243 5' -58.8 NC_002512.2 + 85560 0.66 0.846444
Target:  5'- cUCgAGGAGGCgCGGGagcGGGAgcGGCCGg -3'
miRNA:   3'- uAGgUCCUCCG-GCUU---CUCUa-CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 218779 0.66 0.846444
Target:  5'- cGUCCGGGgacgAGGCCGAGGcGGAcgacaccGCCGUc -3'
miRNA:   3'- -UAGGUCC----UCCGGCUUC-UCUac-----CGGCA- -5'
9243 5' -58.8 NC_002512.2 + 196632 0.66 0.846444
Target:  5'- -cCCGGGuGGCCGAcGccgugugucuGGggGGCCGg -3'
miRNA:   3'- uaGGUCCuCCGGCUuC----------UCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 11596 0.66 0.845668
Target:  5'- -cCCAGGgccggggaccccgAGGCCGAGGAGAaugaguacaUGGUgGa -3'
miRNA:   3'- uaGGUCC-------------UCCGGCUUCUCU---------ACCGgCa -5'
9243 5' -58.8 NC_002512.2 + 211842 0.66 0.838609
Target:  5'- -cCCGGGcucucGGCCGAGGAGAaGGaCCu- -3'
miRNA:   3'- uaGGUCCu----CCGGCUUCUCUaCC-GGca -5'
9243 5' -58.8 NC_002512.2 + 127456 0.66 0.838609
Target:  5'- gGUCCAgcuGGAGGUCGGGcAGAagcgguucgUGGCCGc -3'
miRNA:   3'- -UAGGU---CCUCCGGCUUcUCU---------ACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 94462 0.66 0.837816
Target:  5'- -gCCAGGAagcgaccGGCgGAGGAGAUccaGCCGg -3'
miRNA:   3'- uaGGUCCU-------CCGgCUUCUCUAc--CGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.