miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 229595 0.66 0.765029
Target:  5'- gCGUGGGCuGCCCUGGCcCCC-CGucGc -3'
miRNA:   3'- -GCGUCCGcCGGGACUGcGGGuGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 228038 0.68 0.634101
Target:  5'- cCGgAcGGCGG-CgaGACGCCCGCGGAc -3'
miRNA:   3'- -GCgU-CCGCCgGgaCUGCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 227754 0.66 0.765029
Target:  5'- gGgAGGCGacgaccgaacGCUC-GACGCCCGCGAc- -3'
miRNA:   3'- gCgUCCGC----------CGGGaCUGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 226908 0.75 0.298368
Target:  5'- aCGCGGGaGGCCaagGAgGCCCGCGAGa -3'
miRNA:   3'- -GCGUCCgCCGGga-CUgCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 226858 0.71 0.502392
Target:  5'- aGCAGGCcGCCaggGAgGCCCGgGAGGc -3'
miRNA:   3'- gCGUCCGcCGGga-CUgCGGGUgCUUC- -5'
9246 5' -61.6 NC_002512.2 + 226517 0.74 0.339229
Target:  5'- uGCuGGCGGCCCUGccgcCGUCCucgauCGGAGg -3'
miRNA:   3'- gCGuCCGCCGGGACu---GCGGGu----GCUUC- -5'
9246 5' -61.6 NC_002512.2 + 225805 0.77 0.21261
Target:  5'- cCGCGGGCGGCCggGugGCCUgggaccucgagccGCGggGg -3'
miRNA:   3'- -GCGUCCGCCGGgaCugCGGG-------------UGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 224829 0.69 0.614925
Target:  5'- cCGCGGGCGGgCUgGACGCguauaccuCCACGGc- -3'
miRNA:   3'- -GCGUCCGCCgGGaCUGCG--------GGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 224255 0.81 0.120311
Target:  5'- gGCGGGuCGGCgCCcGACGCCCGCGAGa -3'
miRNA:   3'- gCGUCC-GCCG-GGaCUGCGGGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 221768 0.68 0.62451
Target:  5'- aGCuGGGCGGCcgucguguCCUGGCGCCUGCu--- -3'
miRNA:   3'- gCG-UCCGCCG--------GGACUGCGGGUGcuuc -5'
9246 5' -61.6 NC_002512.2 + 219398 0.76 0.244394
Target:  5'- cCGCuGGuCGGCCCgccgcGACGCCCACGcccGGGg -3'
miRNA:   3'- -GCGuCC-GCCGGGa----CUGCGGGUGC---UUC- -5'
9246 5' -61.6 NC_002512.2 + 219344 0.75 0.285622
Target:  5'- cCGCcGGCuGCCC-GGCGUCCGCGAGGu -3'
miRNA:   3'- -GCGuCCGcCGGGaCUGCGGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 218826 0.67 0.719529
Target:  5'- uCGCccuccGCGGCCCUGcucugcgacuuCGCCgACGAGGu -3'
miRNA:   3'- -GCGuc---CGCCGGGACu----------GCGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 217252 0.68 0.676193
Target:  5'- aGCAGGaUGGCCCUGAUcaucgGCCUcaccagcuccgccauGCGGAc -3'
miRNA:   3'- gCGUCC-GCCGGGACUG-----CGGG---------------UGCUUc -5'
9246 5' -61.6 NC_002512.2 + 214229 0.7 0.520639
Target:  5'- aCGuCAGGCGGCUCgucggcucGcCGCCCGCGGc- -3'
miRNA:   3'- -GC-GUCCGCCGGGa-------CuGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 213675 0.66 0.791146
Target:  5'- gCGgAGGgGaGCCCggcGuCGCCCGCGGu- -3'
miRNA:   3'- -GCgUCCgC-CGGGa--CuGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 212936 0.67 0.728791
Target:  5'- -uCGGGCGGCCCgguccGAguCGCCCuACGGc- -3'
miRNA:   3'- gcGUCCGCCGGGa----CU--GCGGG-UGCUuc -5'
9246 5' -61.6 NC_002512.2 + 212767 0.72 0.440949
Target:  5'- aGCGGGCucgcucGGCCCUGGUGUCCGCGu-- -3'
miRNA:   3'- gCGUCCG------CCGGGACUGCGGGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 211748 0.68 0.681899
Target:  5'- cCGCGacGCGGCCCgGGCGCUgCGgGAGGa -3'
miRNA:   3'- -GCGUc-CGCCGGGaCUGCGG-GUgCUUC- -5'
9246 5' -61.6 NC_002512.2 + 211247 0.66 0.791146
Target:  5'- gCGUcgAGGCGGCCgUcGACGCCauguuCGAc- -3'
miRNA:   3'- -GCG--UCCGCCGGgA-CUGCGGgu---GCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.