miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 5' -57.2 NC_002512.2 + 193160 0.66 0.943205
Target:  5'- -gGCCGGcGucUGGAUCGGCGcGAUGGUc -3'
miRNA:   3'- agUGGUU-Cu-ACCUGGCCGC-CUGCCAc -5'
9249 5' -57.2 NC_002512.2 + 87316 0.66 0.943205
Target:  5'- -gGCCAcgcagacgaugAGGUGGACCGauccGCGGugcGCGGUc -3'
miRNA:   3'- agUGGU-----------UCUACCUGGC----CGCC---UGCCAc -5'
9249 5' -57.2 NC_002512.2 + 91958 0.66 0.943205
Target:  5'- aUCGCCAGGgcGGAgCGGCacguccGGAgGGc- -3'
miRNA:   3'- -AGUGGUUCuaCCUgGCCG------CCUgCCac -5'
9249 5' -57.2 NC_002512.2 + 53222 0.66 0.943205
Target:  5'- gUC-CCAGGA-GGcgcGCUGGCGGGagcUGGUGa -3'
miRNA:   3'- -AGuGGUUCUaCC---UGGCCGCCU---GCCAC- -5'
9249 5' -57.2 NC_002512.2 + 9215 0.66 0.943205
Target:  5'- gUCGCCcAGcacGACgCGGCGGGCcaGGUGg -3'
miRNA:   3'- -AGUGGuUCuacCUG-GCCGCCUG--CCAC- -5'
9249 5' -57.2 NC_002512.2 + 216223 0.66 0.938745
Target:  5'- cUCGuCCGGGAgcUGGAgcCgCGGCGaGACGGUc -3'
miRNA:   3'- -AGU-GGUUCU--ACCU--G-GCCGC-CUGCCAc -5'
9249 5' -57.2 NC_002512.2 + 78466 0.66 0.938745
Target:  5'- gCGCC-GGccGGACCgcgagGGCGGAUGGa- -3'
miRNA:   3'- aGUGGuUCuaCCUGG-----CCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 119340 0.66 0.937365
Target:  5'- cCGCCGAGGUGcuCCGGgCcuucuccgcccgcgGGAUGGUGg -3'
miRNA:   3'- aGUGGUUCUACcuGGCC-G--------------CCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 45199 0.66 0.934066
Target:  5'- -gACCg----GGACCGGCGGcGCGGa- -3'
miRNA:   3'- agUGGuucuaCCUGGCCGCC-UGCCac -5'
9249 5' -57.2 NC_002512.2 + 135861 0.66 0.934066
Target:  5'- cCGCCGAGGa--GCUGGCGGACGa-- -3'
miRNA:   3'- aGUGGUUCUaccUGGCCGCCUGCcac -5'
9249 5' -57.2 NC_002512.2 + 204836 0.66 0.934066
Target:  5'- cCGuCCGGGA-GGACgaCGGCGGuCGGUc -3'
miRNA:   3'- aGU-GGUUCUaCCUG--GCCGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 92987 0.66 0.934066
Target:  5'- gUCGCCcgaccuGGUGG-CCgucucgguGGCGGACGGg- -3'
miRNA:   3'- -AGUGGuu----CUACCuGG--------CCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 201686 0.66 0.934066
Target:  5'- -aACgAGGAgGGACCGGaGGugGuGUGg -3'
miRNA:   3'- agUGgUUCUaCCUGGCCgCCugC-CAC- -5'
9249 5' -57.2 NC_002512.2 + 134205 0.66 0.929168
Target:  5'- cCGCC-GGA-GGcCCGGCGGACGc-- -3'
miRNA:   3'- aGUGGuUCUaCCuGGCCGCCUGCcac -5'
9249 5' -57.2 NC_002512.2 + 27853 0.66 0.929168
Target:  5'- -gACCGcGAgccGGACCGGCGGG-GGa- -3'
miRNA:   3'- agUGGUuCUa--CCUGGCCGCCUgCCac -5'
9249 5' -57.2 NC_002512.2 + 131668 0.66 0.929168
Target:  5'- -gAgCAGGA-GGGCCGcGaGGGCGGUGa -3'
miRNA:   3'- agUgGUUCUaCCUGGC-CgCCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 90482 0.66 0.925608
Target:  5'- aUCACCGgggcguccucgacgGGAUcGGggccgagGCCGGCGGcggacgacgggaacGCGGUGg -3'
miRNA:   3'- -AGUGGU--------------UCUA-CC-------UGGCCGCC--------------UGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 188929 0.66 0.924049
Target:  5'- gUC-CCGguGGcgGGGCgCGGCGGuCGGUu -3'
miRNA:   3'- -AGuGGU--UCuaCCUG-GCCGCCuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 122576 0.66 0.91871
Target:  5'- gUCAUCAAGGUcaGCCGGCgcaagcgagaGGACGGa- -3'
miRNA:   3'- -AGUGGUUCUAccUGGCCG----------CCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 132993 0.66 0.91871
Target:  5'- gCGCCAGGAcGGGCCauGGCcgccGACGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGG--CCGc---CUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.