miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9265 3' -55.1 NC_002512.2 + 169062 0.66 0.97761
Target:  5'- gGCGCGAggggCUccGCG-GCGGCgGCGUCGc -3'
miRNA:   3'- -UGUGCUa---GAacUGCgCGUCG-CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 201705 0.66 0.97761
Target:  5'- uGCGgGAUC--GGCG-GCGGCGuCGUCGu -3'
miRNA:   3'- -UGUgCUAGaaCUGCgCGUCGC-GCAGC- -5'
9265 3' -55.1 NC_002512.2 + 155609 0.66 0.97761
Target:  5'- cCACGGg---GACGUGCGGCGCcuGUgCGa -3'
miRNA:   3'- uGUGCUagaaCUGCGCGUCGCG--CA-GC- -5'
9265 3' -55.1 NC_002512.2 + 179218 0.66 0.97761
Target:  5'- uGCuuuuCGAUCUUGuGCGCcaGCAGCuggcgggccGUGUCGg -3'
miRNA:   3'- -UGu---GCUAGAAC-UGCG--CGUCG---------CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 80849 0.66 0.97761
Target:  5'- -gGCGAgccUCggGACGCGgGGCucgGUGUCGg -3'
miRNA:   3'- ugUGCU---AGaaCUGCGCgUCG---CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 170463 0.66 0.977379
Target:  5'- uCACGA---UGGCGCacagguuGCAGCGCGUg- -3'
miRNA:   3'- uGUGCUagaACUGCG-------CGUCGCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 182990 0.66 0.977145
Target:  5'- gGCACGuAUUUgaggaaacggcgGAUGCGCGGCGagGUCa -3'
miRNA:   3'- -UGUGC-UAGAa-----------CUGCGCGUCGCg-CAGc -5'
9265 3' -55.1 NC_002512.2 + 126740 0.66 0.976194
Target:  5'- gGCGCGugccUCUUGGCccgagacgccucgggGCGCGGCgGCGgCGg -3'
miRNA:   3'- -UGUGCu---AGAACUG---------------CGCGUCG-CGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 30662 0.66 0.975214
Target:  5'- uGCGCcgGAUCUac-CGgGCGGCGCgGUCGg -3'
miRNA:   3'- -UGUG--CUAGAacuGCgCGUCGCG-CAGC- -5'
9265 3' -55.1 NC_002512.2 + 36617 0.66 0.975214
Target:  5'- aGCACaGGUCgccgaggcagGGCGCGCAG-GCGUa- -3'
miRNA:   3'- -UGUG-CUAGaa--------CUGCGCGUCgCGCAgc -5'
9265 3' -55.1 NC_002512.2 + 87690 0.66 0.972636
Target:  5'- gAC-CGA-CggGACGCGCGGCGaCG-CGg -3'
miRNA:   3'- -UGuGCUaGaaCUGCGCGUCGC-GCaGC- -5'
9265 3' -55.1 NC_002512.2 + 196407 0.66 0.972636
Target:  5'- gGCGCGGg---GACGCGgGGgGCGgCGg -3'
miRNA:   3'- -UGUGCUagaaCUGCGCgUCgCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 118550 0.66 0.972636
Target:  5'- aACGCGGUCgcgucgGACGU-CGGgaGCGUCGa -3'
miRNA:   3'- -UGUGCUAGaa----CUGCGcGUCg-CGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 123836 0.66 0.969869
Target:  5'- cGCACGAUCU--GCGCccGCGGCGaCGg-- -3'
miRNA:   3'- -UGUGCUAGAacUGCG--CGUCGC-GCagc -5'
9265 3' -55.1 NC_002512.2 + 4650 0.66 0.969869
Target:  5'- aGCACGGgagcgGAggcccCGC-CGGCGCGUCGa -3'
miRNA:   3'- -UGUGCUagaa-CU-----GCGcGUCGCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 153385 0.66 0.969869
Target:  5'- -gGCGGUCcggagcGACGUGgAGCGCGgCGg -3'
miRNA:   3'- ugUGCUAGaa----CUGCGCgUCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 78258 0.66 0.969293
Target:  5'- gACGCGAUCggcccuccugacgUUguucuccGACGCGCGGacCGUGUCGu -3'
miRNA:   3'- -UGUGCUAG-------------AA-------CUGCGCGUC--GCGCAGC- -5'
9265 3' -55.1 NC_002512.2 + 93702 0.66 0.966909
Target:  5'- gACGCGAUCccGGCGacccCGCcGCGCGgCGg -3'
miRNA:   3'- -UGUGCUAGaaCUGC----GCGuCGCGCaGC- -5'
9265 3' -55.1 NC_002512.2 + 89004 0.66 0.966909
Target:  5'- aGCGCGGg---GACGUcggGCAGCGCGaUCc -3'
miRNA:   3'- -UGUGCUagaaCUGCG---CGUCGCGC-AGc -5'
9265 3' -55.1 NC_002512.2 + 140063 0.66 0.966909
Target:  5'- aGCGCGGUCUcGACGUccucuCGGCGCucaUCGg -3'
miRNA:   3'- -UGUGCUAGAaCUGCGc----GUCGCGc--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.