Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9265 | 3' | -55.1 | NC_002512.2 | + | 137776 | 0.68 | 0.927706 |
Target: 5'- cCGCGGUCUggaggucggcgcucGGCGgGCcGCGCGUCc -3' miRNA: 3'- uGUGCUAGAa-------------CUGCgCGuCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 11004 | 0.74 | 0.683881 |
Target: 5'- cGCGCGAUgagGGCGCGCAcgGCGUCGg -3' miRNA: 3'- -UGUGCUAgaaCUGCGCGUcgCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 4650 | 0.66 | 0.969869 |
Target: 5'- aGCACGGgagcgGAggcccCGC-CGGCGCGUCGa -3' miRNA: 3'- -UGUGCUagaa-CU-----GCGcGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 43040 | 0.67 | 0.953018 |
Target: 5'- gGCGCaGGUCcucggcGACGCGCAGgGCcUCGc -3' miRNA: 3'- -UGUG-CUAGaa----CUGCGCGUCgCGcAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 31818 | 0.68 | 0.930756 |
Target: 5'- gGCGCGGUCgagggGACGCGCgAGa-CGUCc -3' miRNA: 3'- -UGUGCUAGaa---CUGCGCG-UCgcGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 135902 | 0.75 | 0.624183 |
Target: 5'- gACGCGuUCgcgGACGCGCAGCGacaCGUCc -3' miRNA: 3'- -UGUGCuAGaa-CUGCGCGUCGC---GCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 75642 | 0.67 | 0.953018 |
Target: 5'- cACGCGggCgcu-CGCGC-GCGCGUCc -3' miRNA: 3'- -UGUGCuaGaacuGCGCGuCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 101119 | 0.78 | 0.43383 |
Target: 5'- gGCGCGG-CgUGcgcuCGCGCAGCGCGUCGu -3' miRNA: 3'- -UGUGCUaGaACu---GCGCGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 62703 | 1.07 | 0.007189 |
Target: 5'- uACACGAUCUUGACGCGCAGCGCGUCGc -3' miRNA: 3'- -UGUGCUAGAACUGCGCGUCGCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 152444 | 0.68 | 0.920271 |
Target: 5'- -gGCGAUUUcgacgGGCGCGCGGCguugggagGCGUCc -3' miRNA: 3'- ugUGCUAGAa----CUGCGCGUCG--------CGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 93056 | 0.68 | 0.935658 |
Target: 5'- -aGCGAgac-GACGcCGCGGgGCGUCGu -3' miRNA: 3'- ugUGCUagaaCUGC-GCGUCgCGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 80849 | 0.66 | 0.97761 |
Target: 5'- -gGCGAgccUCggGACGCGgGGCucgGUGUCGg -3' miRNA: 3'- ugUGCU---AGaaCUGCGCgUCG---CGCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 86391 | 0.67 | 0.949012 |
Target: 5'- aGCACGGUCUgaacgGACGgGgGGUcCGUCu -3' miRNA: 3'- -UGUGCUAGAa----CUGCgCgUCGcGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 58965 | 0.67 | 0.953018 |
Target: 5'- cGCGCGGcagcaucggCUcGAaGCGCAGCGUGUCc -3' miRNA: 3'- -UGUGCUa--------GAaCUgCGCGUCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 112333 | 0.66 | 0.966909 |
Target: 5'- gACGC---CUUGGCGCuguacaGCAGCGUGUCc -3' miRNA: 3'- -UGUGcuaGAACUGCG------CGUCGCGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 123836 | 0.66 | 0.969869 |
Target: 5'- cGCACGAUCU--GCGCccGCGGCGaCGg-- -3' miRNA: 3'- -UGUGCUAGAacUGCG--CGUCGC-GCagc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 91952 | 0.68 | 0.925627 |
Target: 5'- gGCGCGAUCgccagGGCGgaGCGGCaCGUCc -3' miRNA: 3'- -UGUGCUAGaa---CUGCg-CGUCGcGCAGc -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 124635 | 0.7 | 0.862103 |
Target: 5'- cCugGAUCcgGGUGCGCGGCGCGgCGc -3' miRNA: 3'- uGugCUAGaaCUGCGCGUCGCGCaGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 67261 | 0.69 | 0.883426 |
Target: 5'- uACGCGAUgUacacgucgcccaUGACGCGCugGGCG-GUCGa -3' miRNA: 3'- -UGUGCUAgA------------ACUGCGCG--UCGCgCAGC- -5' |
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9265 | 3' | -55.1 | NC_002512.2 | + | 228092 | 0.68 | 0.920271 |
Target: 5'- cACACGGUCggGA-GCGaggAGgGCGUCGg -3' miRNA: 3'- -UGUGCUAGaaCUgCGCg--UCgCGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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